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| Mutant Information |
|---|
| Mutant Name | FN3818-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3818-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 27
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 14668400 | C-T | HET | ||
| SBS | Chr1 | 26252931 | G-A | Homo | ||
| SBS | Chr1 | 34223613 | C-T | HET | ||
| SBS | Chr1 | 7104612 | T-A | HET | ||
| SBS | Chr10 | 1972021 | A-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os10g04230 |
| SBS | Chr10 | 9313650 | C-A | HET | ||
| SBS | Chr11 | 10194044 | A-T | Homo | ||
| SBS | Chr11 | 14183016 | G-A | Homo | ||
| SBS | Chr12 | 1029490 | G-A | HET | ||
| SBS | Chr12 | 10798529 | G-A | HET | ||
| SBS | Chr12 | 12649539 | C-T | HET | ||
| SBS | Chr12 | 22327658 | G-C | HET | ||
| SBS | Chr12 | 8701306 | C-T | HET | ||
| SBS | Chr2 | 31852231 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os02g52040 |
| SBS | Chr3 | 32496904 | G-T | Homo | ||
| SBS | Chr4 | 10014078 | G-T | HET | ||
| SBS | Chr4 | 8465147 | G-A | Homo | ||
| SBS | Chr5 | 22845229 | G-A | HET | ||
| SBS | Chr5 | 4027969 | C-T | Homo | ||
| SBS | Chr7 | 17944395 | C-T | HET | ||
| SBS | Chr8 | 17129816 | A-T | HET | ||
| SBS | Chr8 | 22368252 | T-A | HET | ||
| SBS | Chr8 | 26138114 | C-A | HET | ||
| SBS | Chr9 | 13245053 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os09g21860 |
| SBS | Chr9 | 13592587 | A-T | HET | ||
| SBS | Chr9 | 22615310 | A-G | HET | ||
| SBS | Chr9 | 4763761 | C-T | HET |
Deletions: 24
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr2 | 54135 | 54142 | 7 | |
| Deletion | Chr12 | 1443172 | 1443179 | 7 | |
| Deletion | Chr2 | 2510068 | 2510075 | 7 | |
| Deletion | Chr5 | 2825098 | 2825100 | 2 | |
| Deletion | Chr4 | 4617754 | 4617770 | 16 | |
| Deletion | Chr7 | 5920001 | 6016000 | 95999 | 12 |
| Deletion | Chr3 | 14063485 | 14063488 | 3 | LOC_Os03g24680 |
| Deletion | Chr8 | 14347364 | 14347379 | 15 | |
| Deletion | Chr9 | 14366369 | 14366370 | 1 | LOC_Os09g24200 |
| Deletion | Chr2 | 15209090 | 15209094 | 4 | |
| Deletion | Chr12 | 15463800 | 15463817 | 17 | |
| Deletion | Chr7 | 15678001 | 15683000 | 4999 | LOC_Os07g27060 |
| Deletion | Chr12 | 16260959 | 16260960 | 1 | |
| Deletion | Chr10 | 16317047 | 16317050 | 3 | |
| Deletion | Chr5 | 21114844 | 21114861 | 17 | |
| Deletion | Chr2 | 22263031 | 22263036 | 5 | |
| Deletion | Chr8 | 22368229 | 22368241 | 12 | |
| Deletion | Chr3 | 24624414 | 24624415 | 1 | |
| Deletion | Chr2 | 24722032 | 24722036 | 4 | |
| Deletion | Chr11 | 26072450 | 26072462 | 12 | |
| Deletion | Chr6 | 26751497 | 26751498 | 1 | |
| Deletion | Chr5 | 29103569 | 29103571 | 2 | |
| Deletion | Chr1 | 33531091 | 33531092 | 1 | |
| Deletion | Chr1 | 42354495 | 42354506 | 11 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 5943189 | 5943485 | 297 | |
| Insertion | Chr3 | 19103743 | 19103748 | 6 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr3 | 13460189 | 13548308 | |
| Inversion | Chr8 | 17606594 | 18151143 | LOC_Os08g28784 |
| Inversion | Chr8 | 17606599 | 18151148 | LOC_Os08g28784 |
No Translocation