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| Mutant Information |
|---|
| Mutant Name | FN3819-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3819-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 37
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 25238353 | G-T | HET | ||
| SBS | Chr1 | 27751109 | C-T | HET | ||
| SBS | Chr1 | 32480362 | T-C | HET | ||
| SBS | Chr1 | 36565680 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g63100 |
| SBS | Chr1 | 40156816 | T-A | HET | ||
| SBS | Chr1 | 5066986 | A-G | HET | ||
| SBS | Chr1 | 7693142 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g13740 |
| SBS | Chr10 | 13104168 | T-A | Homo | ||
| SBS | Chr11 | 18363192 | T-A | HET | ||
| SBS | Chr11 | 20246887 | C-T | HET | STOP_GAINED | LOC_Os11g34590 |
| SBS | Chr12 | 16297555 | G-T | HET | ||
| SBS | Chr12 | 16949004 | C-T | HET | ||
| SBS | Chr12 | 19347115 | C-T | HET | ||
| SBS | Chr12 | 21486168 | C-T | HET | ||
| SBS | Chr2 | 15336674 | C-T | HET | ||
| SBS | Chr2 | 5585883 | C-T | HET | ||
| SBS | Chr2 | 695446 | G-C | HET | ||
| SBS | Chr3 | 28685339 | T-C | HET | ||
| SBS | Chr3 | 3302131 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g06560 |
| SBS | Chr3 | 33761617 | C-T | HET | ||
| SBS | Chr4 | 22989329 | T-A | Homo | ||
| SBS | Chr4 | 27616430 | C-T | HET | ||
| SBS | Chr4 | 4893010 | G-A | HET | ||
| SBS | Chr5 | 4660142 | C-T | HET | ||
| SBS | Chr6 | 16617719 | T-C | HET | ||
| SBS | Chr6 | 17124079 | C-G | HET | ||
| SBS | Chr6 | 19654302 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os06g33790 |
| SBS | Chr7 | 19430445 | A-T | HET | ||
| SBS | Chr8 | 13007144 | C-T | HET | ||
| SBS | Chr8 | 13943952 | C-A | HET | ||
| SBS | Chr8 | 20964396 | A-G | HET | ||
| SBS | Chr8 | 22505497 | G-A | HET | ||
| SBS | Chr8 | 24401871 | A-G | HET | ||
| SBS | Chr8 | 26116519 | C-T | HET | ||
| SBS | Chr8 | 2653669 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os08g05130 |
| SBS | Chr9 | 14890488 | G-A | HET | ||
| SBS | Chr9 | 2203333 | C-G | Homo |
Deletions: 14
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 184645 | 184646 | 1 | |
| Deletion | Chr8 | 4252392 | 4252457 | 65 | |
| Deletion | Chr6 | 6074566 | 6074567 | 1 | |
| Deletion | Chr4 | 9917816 | 9917817 | 1 | |
| Deletion | Chr5 | 14453139 | 14453140 | 1 | |
| Deletion | Chr1 | 17352909 | 17352923 | 14 | |
| Deletion | Chr9 | 17554886 | 17554888 | 2 | |
| Deletion | Chr9 | 17562825 | 17562827 | 2 | |
| Deletion | Chr8 | 19205507 | 19205508 | 1 | |
| Deletion | Chr5 | 20842652 | 20842654 | 2 | LOC_Os05g35100 |
| Deletion | Chr10 | 21290861 | 21290862 | 1 | |
| Deletion | Chr3 | 23414785 | 23414789 | 4 | |
| Deletion | Chr11 | 25498970 | 25498971 | 1 | |
| Deletion | Chr4 | 28172001 | 28207000 | 34999 | 9 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 6049225 | 6049226 | 2 | |
| Insertion | Chr12 | 17891331 | 17891378 | 48 | |
| Insertion | Chr12 | 9796244 | 9796244 | 1 | LOC_Os12g17100 |
| Insertion | Chr5 | 15342362 | 15342364 | 3 |
No Inversion
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr7 | 10511348 | Chr6 | 11334670 | |
| Translocation | Chr7 | 12534275 | Chr6 | 18214712 | |
| Translocation | Chr10 | 12840857 | Chr1 | 40275820 | 2 |
| Translocation | Chr10 | 12847867 | Chr1 | 40275819 | 2 |