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Mutant Information

Variant Information

Single base substitutions: 40

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	17181979	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g29030
SBS	Chr2	25114902	C-T	HET
SBS	Chr2	26480110	T-A	HET
SBS	Chr3	4982247	G-A	Homo
SBS	Chr3	12454731	A-G	HET
SBS	Chr3	17196729	A-T	HET
SBS	Chr3	33637387	C-A	HET
SBS	Chr4	1698657	G-A	HET
SBS	Chr4	6633283	G-A	HET
SBS	Chr4	20317873	G-A	HET
SBS	Chr4	22331866	G-T	HET
SBS	Chr4	29167432	A-G	HET
SBS	Chr4	32985697	C-T	HET
SBS	Chr5	1591781	A-G	HET
SBS	Chr5	19231385	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g32840
SBS	Chr5	24498536	T-C	Homo
SBS	Chr5	24499348	G-T	Homo
SBS	Chr5	24499349	A-T	Homo
SBS	Chr5	25405637	A-T	HET
SBS	Chr5	25752969	G-A	Homo
SBS	Chr5	25794923	C-T	HET
SBS	Chr6	2492546	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g05500
SBS	Chr6	14798820	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os06g25280
SBS	Chr6	15903671	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g28020
SBS	Chr6	17398229	T-A	HET
SBS	Chr6	17924167	C-T	HET
SBS	Chr6	17924174	C-T	HET
SBS	Chr7	14593964	C-G	HET
SBS	Chr7	14593965	G-C	HET
SBS	Chr7	20162728	A-C	Homo
SBS	Chr7	20162732	T-A	Homo
SBS	Chr8	9896806	C-T	HET
SBS	Chr8	13686734	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g22760
SBS	Chr9	8258517	C-T	HET
SBS	Chr9	17636900	C-T	HET
SBS	Chr10	16820132	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os10g32010
SBS	Chr12	16580810	T-C	HET
SBS	Chr12	17601624	G-C	Homo
SBS	Chr12	22882568	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g37290
SBS	Chr12	25185069	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g40680

Deletions: 10

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	230121	230133	12
Deletion	Chr7	449001	1116000	666999	118
Deletion	Chr12	4350777	4350800	23
Deletion	Chr1	10780791	10780794	3
Deletion	Chr1	12519371	12519378	7
Deletion	Chr5	13648799	13648801	2
Deletion	Chr10	20234187	20234246	59
Deletion	Chr9	21449001	21524000	74999	7
Deletion	Chr9	21606001	21765000	158999	30
Deletion	Chr4	34107671	34107682	11

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr5	19038922	19038922	1
Insertion	Chr10	18883964	18883964	1	LOC_Os10g35320
Insertion	Chr3	7927151	7927183	33	LOC_Os03g14600
Insertion	Chr3	21463072	21463073	2
Insertion	Chr8	18790086	18790138	53
Insertion	Chr10	1412742	1412742	1
Insertion	Chr12	19065908	19065908	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	17333416	18216906	LOC_Os09g28500
Inversion	Chr9	21565011	21762512	LOC_Os09g37780
Inversion	Chr11	25301588	25301928

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	1243	Chr2	162
Translocation	Chr11	15354460	Chr7	1575816	LOC_Os07g03780
Translocation	Chr11	15354470	Chr7	1493984
Translocation	Chr12	22800132	Chr8	17299284	2

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