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| Mutant Information |
|---|
| Mutant Name | FN3825-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3825-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 34
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 1521181 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g03690 |
| SBS | Chr1 | 21875200 | T-C | HET | ||
| SBS | Chr1 | 22829284 | C-T | HET | ||
| SBS | Chr1 | 24626018 | G-A | HET | ||
| SBS | Chr1 | 9096328 | A-G | HET | ||
| SBS | Chr10 | 13523788 | A-C | Homo | ||
| SBS | Chr11 | 11085493 | C-T | HET | ||
| SBS | Chr11 | 11568447 | C-T | Homo | ||
| SBS | Chr12 | 14136493 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os12g24680 |
| SBS | Chr12 | 15277318 | G-A | HET | ||
| SBS | Chr12 | 20222362 | T-C | HET | ||
| SBS | Chr2 | 18742844 | C-T | HET | ||
| SBS | Chr2 | 23036906 | C-A | HET | ||
| SBS | Chr2 | 29397670 | C-T | HET | ||
| SBS | Chr3 | 14933080 | C-T | HET | ||
| SBS | Chr4 | 16218059 | C-T | HET | ||
| SBS | Chr4 | 21874528 | G-A | HET | ||
| SBS | Chr4 | 32915208 | C-T | HET | ||
| SBS | Chr4 | 35408299 | T-A | HET | ||
| SBS | Chr5 | 24139605 | C-G | HET | ||
| SBS | Chr5 | 25100211 | A-T | HET | ||
| SBS | Chr5 | 27771221 | C-A | HET | ||
| SBS | Chr5 | 5421911 | G-T | HET | ||
| SBS | Chr5 | 9275450 | T-C | HET | ||
| SBS | Chr6 | 11577715 | T-G | Homo | ||
| SBS | Chr6 | 25879909 | G-A | HET | ||
| SBS | Chr6 | 7170746 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os06g13070 |
| SBS | Chr6 | 9940878 | T-C | Homo | ||
| SBS | Chr7 | 12999684 | T-C | HET | ||
| SBS | Chr7 | 21311699 | C-T | HET | ||
| SBS | Chr7 | 4347148 | C-T | Homo | ||
| SBS | Chr8 | 12059990 | C-A | HET | ||
| SBS | Chr8 | 15489737 | G-C | Homo | ||
| SBS | Chr9 | 4236692 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os09g08180 |
Deletions: 14
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr4 | 2821675 | 2821680 | 5 | LOC_Os04g05570 |
| Deletion | Chr12 | 4843623 | 4843625 | 2 | |
| Deletion | Chr7 | 12403610 | 12403616 | 6 | |
| Deletion | Chr5 | 13470662 | 13470664 | 2 | |
| Deletion | Chr1 | 13905884 | 13905897 | 13 | |
| Deletion | Chr6 | 15714499 | 15714500 | 1 | LOC_Os06g27740 |
| Deletion | Chr8 | 17546455 | 17546456 | 1 | |
| Deletion | Chr9 | 22593720 | 22593721 | 1 | |
| Deletion | Chr3 | 24424326 | 24424329 | 3 | |
| Deletion | Chr8 | 24839367 | 24839370 | 3 | LOC_Os08g39310 |
| Deletion | Chr11 | 26082426 | 26082428 | 2 | LOC_Os11g43240 |
| Deletion | Chr8 | 26466484 | 26466491 | 7 | |
| Deletion | Chr8 | 26589472 | 26589487 | 15 | |
| Deletion | Chr8 | 26593600 | 26593602 | 2 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 14351763 | 14351804 | 42 | |
| Insertion | Chr4 | 8368902 | 8368902 | 1 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr7 | 8835832 | 8836135 | |
| Inversion | Chr3 | 26082421 | 26085814 | |
| Inversion | Chr3 | 26082422 | 26085819 |
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr4 | 2858237 | Chr3 | 25679382 | |
| Translocation | Chr12 | 15876581 | Chr2 | 16818007 | |
| Translocation | Chr8 | 17268772 | Chr4 | 4104012 | LOC_Os08g28290 |
| Translocation | Chr11 | 22995454 | Chr10 | 21784070 |