Search Results
| Mutant Information |
|---|
| Mutant Name | FN3826-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3826-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 42
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 11980628 | T-C | HET | ||
| SBS | Chr1 | 16288992 | T-C | Homo | ||
| SBS | Chr1 | 24860679 | T-A | HET | ||
| SBS | Chr1 | 25912008 | C-T | HET | ||
| SBS | Chr1 | 29087764 | C-T | HET | ||
| SBS | Chr2 | 14639578 | G-A | HET | ||
| SBS | Chr2 | 18356930 | G-T | HET | ||
| SBS | Chr2 | 24641239 | C-T | HET | ||
| SBS | Chr2 | 33727811 | T-A | HET | ||
| SBS | Chr3 | 2046197 | T-A | Homo | ||
| SBS | Chr3 | 18049458 | T-A | HET | ||
| SBS | Chr3 | 26452056 | G-A | HET | ||
| SBS | Chr3 | 31711575 | A-G | HET | ||
| SBS | Chr3 | 33994231 | A-G | Homo | ||
| SBS | Chr4 | 6441623 | C-A | HET | ||
| SBS | Chr4 | 13725875 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os04g24020 |
| SBS | Chr4 | 14101521 | C-T | HET | ||
| SBS | Chr5 | 4648624 | T-C | HET | ||
| SBS | Chr5 | 14004492 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os05g24210 |
| SBS | Chr5 | 26860479 | A-T | HET | ||
| SBS | Chr5 | 26860480 | G-T | HET | ||
| SBS | Chr5 | 26860481 | C-T | HET | ||
| SBS | Chr6 | 4091682 | T-C | Homo | ||
| SBS | Chr6 | 14621956 | G-A | HET | ||
| SBS | Chr7 | 3686008 | C-A | HET | ||
| SBS | Chr7 | 7306078 | C-G | HET | ||
| SBS | Chr8 | 11096957 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os08g18100 |
| SBS | Chr8 | 25492835 | T-C | HET | ||
| SBS | Chr9 | 541452 | A-T | HET | ||
| SBS | Chr9 | 19627175 | A-T | Homo | ||
| SBS | Chr10 | 16716584 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os10g31864 |
| SBS | Chr10 | 18746087 | T-C | HET | ||
| SBS | Chr11 | 8616749 | G-A | Homo | ||
| SBS | Chr11 | 19089059 | T-A | HET | ||
| SBS | Chr12 | 2288256 | A-G | HET | ||
| SBS | Chr12 | 2790254 | T-A | HET | ||
| SBS | Chr12 | 8896199 | A-T | HET | ||
| SBS | Chr12 | 11205239 | G-T | Homo | ||
| SBS | Chr12 | 11205243 | G-T | Homo | ||
| SBS | Chr12 | 11205244 | A-T | Homo | ||
| SBS | Chr12 | 11205247 | G-T | Homo | ||
| SBS | Chr12 | 13755519 | T-A | HET |
Deletions: 11
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr7 | 1783766 | 1783776 | 10 | |
| Deletion | Chr6 | 2349218 | 2349225 | 7 | LOC_Os06g05230 |
| Deletion | Chr12 | 2361513 | 2361514 | 1 | |
| Deletion | Chr9 | 2537994 | 2537997 | 3 | |
| Deletion | Chr2 | 8713970 | 8713972 | 2 | |
| Deletion | Chr5 | 11254071 | 11254084 | 13 | LOC_Os05g19380 |
| Deletion | Chr3 | 22099491 | 22099492 | 1 | |
| Deletion | Chr7 | 23115629 | 23115632 | 3 | |
| Deletion | Chr11 | 24747001 | 24842000 | 94999 | 12 |
| Deletion | Chr7 | 24773366 | 24773369 | 3 | LOC_Os07g41360 |
| Deletion | Chr7 | 29490469 | 29490474 | 5 | LOC_Os07g49250 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr2 | 19556208 | 19556211 | 4 | |
| Insertion | Chr3 | 35861879 | 35861879 | 1 | LOC_Os03g63480 |
| Insertion | Chr2 | 7458562 | 7458568 | 7 |
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr3 | 6485816 | 6519182 | 2 |
| Inversion | Chr3 | 6485821 | 6519194 | 2 |
| Inversion | Chr5 | 26873296 | 26876746 | |
| Inversion | Chr5 | 26873299 | 26876752 |
Translocations: 3
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 12144424 | Chr1 | 16265877 | 2 |
| Translocation | Chr7 | 16850881 | Chr3 | 25690549 | LOC_Os03g45519 |
| Translocation | Chr2 | 29415439 | Chr1 | 14947535 | LOC_Os02g48050 |