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| Mutant Information |
|---|
| Mutant Name | FN3827-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3827-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 25
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 17088268 | C-G | HET | ||
| SBS | Chr1 | 18428137 | C-T | HET | STOP_GAINED | LOC_Os01g33460 |
| SBS | Chr1 | 33376032 | G-A | HET | ||
| SBS | Chr11 | 606242 | A-C | HET | ||
| SBS | Chr11 | 8232577 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os11g14610 |
| SBS | Chr12 | 10576687 | G-A | HET | ||
| SBS | Chr12 | 25013920 | C-T | HET | ||
| SBS | Chr2 | 19532638 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os02g32880 |
| SBS | Chr3 | 34077437 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os03g59860 |
| SBS | Chr4 | 13276712 | T-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os04g23270 |
| SBS | Chr4 | 13291944 | G-A | Homo | ||
| SBS | Chr4 | 3064353 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g05920 |
| SBS | Chr5 | 18151952 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os05g31210 |
| SBS | Chr5 | 22852394 | T-C | Homo | ||
| SBS | Chr6 | 12841899 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os06g22130 |
| SBS | Chr6 | 13569157 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os06g23240 |
| SBS | Chr6 | 16097646 | C-G | HET | ||
| SBS | Chr6 | 24377401 | G-A | Homo | ||
| SBS | Chr7 | 2375733 | A-G | Homo | ||
| SBS | Chr7 | 27020476 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os07g45290 |
| SBS | Chr7 | 3038410 | G-C | Homo | ||
| SBS | Chr7 | 5680993 | A-G | HET | ||
| SBS | Chr7 | 7674643 | G-A | HET | ||
| SBS | Chr8 | 27746761 | C-T | HET | ||
| SBS | Chr9 | 10879469 | C-T | HET |
Deletions: 11
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr2 | 633118 | 633123 | 5 | |
| Deletion | Chr11 | 2734327 | 2734341 | 14 | |
| Deletion | Chr6 | 2767788 | 2767791 | 3 | |
| Deletion | Chr1 | 3964430 | 3964751 | 321 | |
| Deletion | Chr12 | 7071660 | 7071663 | 3 | LOC_Os12g12820 |
| Deletion | Chr1 | 8045560 | 8045563 | 3 | |
| Deletion | Chr3 | 13106943 | 13107034 | 91 | |
| Deletion | Chr12 | 16444986 | 16444987 | 1 | |
| Deletion | Chr5 | 17942248 | 17942258 | 10 | |
| Deletion | Chr8 | 18742349 | 18742356 | 7 | LOC_Os08g30450 |
| Deletion | Chr6 | 28518987 | 28518988 | 1 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr10 | 15059864 | 15059865 | 2 |
No Inversion
Translocations: 5
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr6 | 16459165 | Chr2 | 19545331 | |
| Translocation | Chr6 | 16459172 | Chr2 | 19545660 | |
| Translocation | Chr7 | 24512509 | Chr1 | 10950220 | |
| Translocation | Chr12 | 25748212 | Chr4 | 21769254 | |
| Translocation | Chr5 | 27408690 | Chr4 | 28035447 |