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Mutant Information

Mutant Name	FN3834-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3834-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 59

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13077455	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g23270
SBS	Chr1	19787204	G-A	HET
SBS	Chr1	20335370	C-T	HET
SBS	Chr1	27423195	C-T	HET
SBS	Chr1	31476191	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g54700
SBS	Chr1	35400654	A-G	HET
SBS	Chr1	39813437	G-A	HET
SBS	Chr1	7156200	T-A	Homo
SBS	Chr1	7710722	G-A	Homo
SBS	Chr10	20017472	C-T	HET
SBS	Chr10	9537711	G-A	HET
SBS	Chr11	11678473	C-T	Homo
SBS	Chr11	15173681	T-A	Homo
SBS	Chr11	18707645	T-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os11g31830
SBS	Chr11	20064422	C-T	Homo
SBS	Chr11	23768054	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g39870
SBS	Chr11	5435663	A-T	Homo
SBS	Chr11	9235390	C-T	HET
SBS	Chr12	10271759	G-T	Homo
SBS	Chr12	14040481	A-G	Homo
SBS	Chr12	22095033	G-T	HET
SBS	Chr12	8847104	C-A	HET
SBS	Chr2	32764606	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g53550
SBS	Chr2	32863623	C-T	HET
SBS	Chr3	10785461	G-T	HET
SBS	Chr3	15601659	A-T	HET
SBS	Chr3	15601663	C-A	HET
SBS	Chr3	23687987	G-A	HET
SBS	Chr3	2512140	T-C	HET
SBS	Chr3	26845685	A-G	HET
SBS	Chr3	26845687	C-T	HET
SBS	Chr4	13810359	C-T	HET
SBS	Chr4	17380560	T-G	Homo
SBS	Chr4	17473067	A-G	Homo
SBS	Chr4	22984498	A-T	HET
SBS	Chr4	23955112	T-C	HET
SBS	Chr4	3207302	C-T	HET
SBS	Chr4	33376458	C-T	HET
SBS	Chr5	12876176	A-G	Homo
SBS	Chr5	18512760	A-G	HET
SBS	Chr5	20214031	C-T	HET
SBS	Chr5	27715090	A-G	Homo
SBS	Chr5	5884877	G-T	HET
SBS	Chr5	5884879	G-T	HET
SBS	Chr6	16196322	A-T	Homo
SBS	Chr6	2419806	C-T	HET	STOP_GAINED	LOC_Os06g05368
SBS	Chr6	4776556	T-C	HET
SBS	Chr7	3156175	G-A	HET
SBS	Chr7	9743586	G-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os07g16610
SBS	Chr8	10974957	T-C	HET
SBS	Chr8	22518414	G-A	HET
SBS	Chr8	352229	T-A	Homo
SBS	Chr9	12659697	G-A	Homo
SBS	Chr9	16414276	G-C	HET
SBS	Chr9	21840041	T-C	HET
SBS	Chr9	2292374	G-A	HET
SBS	Chr9	5495450	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os09g10080
SBS	Chr9	8119236	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os09g13820
SBS	Chr9	9715872	T-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os09g15900

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	2960001	2978000	17999	4
Deletion	Chr10	2982001	3165000	182999	22
Deletion	Chr10	3172001	3209000	36999	7
Deletion	Chr10	3214001	3649000	434999	67
Deletion	Chr8	4049363	4049368	5
Deletion	Chr12	5527186	5527207	21	LOC_Os12g10430
Deletion	Chr11	11614606	11614608	2
Deletion	Chr3	13272601	13272609	8
Deletion	Chr5	19733001	19759000	25999	4
Deletion	Chr9	20377015	20377020	5
Deletion	Chr7	21066907	21066909	2
Deletion	Chr11	21267523	21267528	5
Deletion	Chr12	22564957	22564969	12
Deletion	Chr5	22625265	22625283	18
Deletion	Chr10	23077001	23101000	23999	7
Deletion	Chr7	24349947	24349948	1	LOC_Os07g40630
Deletion	Chr2	30952001	30996000	43999	10
Deletion	Chr2	31640001	31854000	213999	36

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	27809054	27809057	4
Insertion	Chr11	4262538	4262541	4
Insertion	Chr6	27197884	27197884	1
Insertion	Chr7	21985710	21985711	2
Insertion	Chr9	15428300	15428301	2
Insertion	Chr9	6535410	6535410	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	2195133	2954929
Inversion	Chr5	23923882	24026398
Inversion	Chr2	30951960	31147795
Inversion	Chr2	30997254	31147797	LOC_Os02g50760

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	1589518	Chr2	9833429
Translocation	Chr10	5484403	Chr2	14658145
Translocation	Chr9	5556218	Chr7	9565144	2
Translocation	Chr12	11347786	Chr4	15227358
Translocation	Chr6	17879908	Chr1	25146875	LOC_Os01g43895
Translocation	Chr6	18236820	Chr2	31864506
Translocation	Chr5	18985805	Chr2	3226637

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