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Mutant Information

Mutant Name	FN3836-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3836-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 17

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14763131	A-C	Homo	NON_SYNONYMOUS_CODING	LOC_Os01g26039
SBS	Chr1	18979817	T-A	Homo
SBS	Chr11	16157918	A-G	HET
SBS	Chr11	16343352	G-A	HET
SBS	Chr2	14135072	C-A	HET
SBS	Chr4	16244862	C-T	Homo
SBS	Chr4	16244863	C-T	Homo
SBS	Chr5	13179712	T-G	HET
SBS	Chr6	6544756	T-A	HET
SBS	Chr7	12476635	T-C	HET
SBS	Chr7	21103681	C-A	HET
SBS	Chr7	28238127	A-G	HET
SBS	Chr8	3427277	T-C	HET
SBS	Chr8	4174682	C-T	HET
SBS	Chr9	19948546	G-A	Homo
SBS	Chr9	21957692	T-A	Homo
SBS	Chr9	6477201	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g11600

Deletions: 8

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	676001	745000	68999	14
Deletion	Chr5	3983174	3983181	7	LOC_Os05g07470
Deletion	Chr6	9792001	9955000	162999	27
Deletion	Chr4	9970129	9970137	8
Deletion	Chr2	10681320	10681326	6
Deletion	Chr8	16576616	16576617	1
Deletion	Chr1	18742064	18742074	10
Deletion	Chr1	22329000	22329001	1

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	26996498	26996498	1
Insertion	Chr12	11626172	11626214	43

No Inversion

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	11094451	Chr3	6292477	LOC_Os03g12010
Translocation	Chr7	12408461	Chr1	27404387
Translocation	Chr11	13434998	Chr2	8032395
Translocation	Chr9	15074541	Chr6	4406867
Translocation	Chr6	15401531	Chr1	16530869	LOC_Os01g29488
Translocation	Chr4	15518945	Chr2	22225358
Translocation	Chr4	15519059	Chr2	22225444