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| Mutant Information |
|---|
| Mutant Name | FN3837-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3837-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 39
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 10898800 | T-C | HET | ||
| SBS | Chr1 | 13262285 | T-C | HET | ||
| SBS | Chr1 | 14004891 | G-A | HET | ||
| SBS | Chr1 | 30654149 | G-A | Homo | ||
| SBS | Chr1 | 35728066 | A-T | Homo | ||
| SBS | Chr10 | 9339915 | C-T | HET | ||
| SBS | Chr11 | 12733590 | G-A | HET | ||
| SBS | Chr11 | 13275437 | C-A | Homo | ||
| SBS | Chr11 | 17542950 | C-A | Homo | STOP_GAINED | LOC_Os11g30170 |
| SBS | Chr11 | 17759612 | C-A | HET | ||
| SBS | Chr11 | 3444785 | T-C | Homo | ||
| SBS | Chr11 | 4497517 | C-T | Homo | ||
| SBS | Chr12 | 11450660 | G-A | Homo | ||
| SBS | Chr12 | 17445890 | G-A | HET | ||
| SBS | Chr12 | 18235270 | T-C | HET | ||
| SBS | Chr12 | 22144012 | C-T | HET | ||
| SBS | Chr12 | 2930039 | C-T | HET | ||
| SBS | Chr12 | 2930045 | T-A | HET | ||
| SBS | Chr2 | 13531389 | G-A | HET | ||
| SBS | Chr3 | 12081102 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g21180 |
| SBS | Chr3 | 12081103 | G-T | HET | STOP_GAINED | LOC_Os03g21180 |
| SBS | Chr3 | 23941410 | C-T | HET | ||
| SBS | Chr3 | 24990753 | T-A | HET | ||
| SBS | Chr3 | 28034291 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os03g49210 |
| SBS | Chr3 | 3032084 | T-A | HET | ||
| SBS | Chr4 | 19776621 | C-T | HET | ||
| SBS | Chr5 | 14050171 | A-G | HET | ||
| SBS | Chr5 | 16372154 | G-C | HET | ||
| SBS | Chr5 | 1661440 | C-T | HET | ||
| SBS | Chr5 | 17990868 | A-G | HET | ||
| SBS | Chr5 | 26243423 | A-T | HET | ||
| SBS | Chr5 | 4010049 | T-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os05g07500 |
| SBS | Chr6 | 12680150 | C-G | HET | ||
| SBS | Chr6 | 17962954 | C-T | HET | ||
| SBS | Chr6 | 17962955 | A-T | HET | ||
| SBS | Chr6 | 27102897 | A-G | HET | ||
| SBS | Chr7 | 3512330 | C-T | Homo | ||
| SBS | Chr7 | 9208790 | A-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os07g15850 |
| SBS | Chr9 | 21319349 | C-T | HET |
Deletions: 6
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr7 | 9296053 | 9296064 | 11 | |
| Deletion | Chr12 | 12029895 | 12029896 | 1 | |
| Deletion | Chr1 | 20132456 | 20132471 | 15 | |
| Deletion | Chr8 | 21317443 | 21317444 | 1 | LOC_Os08g34020 |
| Deletion | Chr6 | 23231014 | 23231016 | 2 | |
| Deletion | Chr6 | 27071001 | 27082000 | 10999 | 2 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr2 | 8352718 | 8352725 | 8 | |
| Insertion | Chr7 | 23790704 | 23790707 | 4 |
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr8 | 18063610 | 18164015 | |
| Inversion | Chr8 | 18063672 | 18164036 | |
| Inversion | Chr5 | 23910595 | 23959796 | LOC_Os05g40780 |
| Inversion | Chr5 | 23910605 | 23959798 |
Translocations: 8
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 1935236 | Chr5 | 26047986 | LOC_Os05g44792 |
| Translocation | Chr9 | 4654414 | Chr1 | 5279278 | |
| Translocation | Chr9 | 4657087 | Chr1 | 5279265 | LOC_Os09g08830 |
| Translocation | Chr11 | 19695723 | Chr7 | 8780640 | LOC_Os11g33300 |
| Translocation | Chr9 | 19929083 | Chr4 | 26648533 | 2 |
| Translocation | Chr11 | 25330902 | Chr1 | 34371295 | |
| Translocation | Chr7 | 28706365 | Chr6 | 13270081 | |
| Translocation | Chr4 | 32799984 | Chr3 | 5096190 |