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Mutant Information

Mutant Name	FN3841-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3841-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 15

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	28149262	G-T	HET
SBS	Chr2	14622107	G-T	Homo
SBS	Chr2	27938534	A-G	HET
SBS	Chr2	35019453	T-C	HET
SBS	Chr4	215196	C-T	HET
SBS	Chr5	16890867	T-A	Homo
SBS	Chr6	19332141	G-A	HET
SBS	Chr7	8655813	C-A	HET
SBS	Chr7	14437554	G-C	HET
SBS	Chr8	7873297	A-G	HET
SBS	Chr8	22232824	A-G	HET
SBS	Chr10	6979873	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g12548
SBS	Chr10	19197185	C-T	HET
SBS	Chr11	9743801	C-A	Homo
SBS	Chr12	9025247	C-T	Homo

Deletions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	171257	171258	1
Deletion	Chr10	5524729	5524735	6
Deletion	Chr11	15112744	15112752	8
Deletion	Chr8	16268365	16268366	1
Deletion	Chr4	18204986	18205006	20
Deletion	Chr3	27710831	27710832	1
Deletion	Chr3	28149993	28149996	3

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	11558331	11558334	4
Insertion	Chr8	8547068	8547068	1
Insertion	Chr8	13853041	13853041	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	11024217	11130337	2
Inversion	Chr9	11024650	11130343	2
Inversion	Chr6	25014488	25043260	2
Inversion	Chr6	25014828	25043259	2

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	10944339	Chr2	7858183	2
Translocation	Chr9	11024226	Chr2	31395196	LOC_Os09g18010
Translocation	Chr9	11024644	Chr2	31395192	LOC_Os09g18010
Translocation	Chr5	17271128	Chr2	16769546
Translocation	Chr11	19859161	Chr7	16610234	LOC_Os11g33970
Translocation	Chr7	23610194	Chr1	40306117
Translocation	Chr3	31068314	Chr1	16252163