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Mutant Information

Variant Information

Single base substitutions: 35

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4258638	A-T	HET
SBS	Chr1	19647702	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g35504
SBS	Chr1	22547871	T-C	HET
SBS	Chr1	33604051	A-T	HET
SBS	Chr1	35269299	A-G	HET
SBS	Chr3	18840292	T-G	HET
SBS	Chr3	24768776	C-T	HET
SBS	Chr4	1818809	C-G	Homo
SBS	Chr4	4018462	C-T	HET
SBS	Chr4	13981531	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g24380
SBS	Chr4	34402748	C-T	HET
SBS	Chr5	3601637	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g06870
SBS	Chr5	9186419	T-C	HET
SBS	Chr5	28996697	C-T	HET
SBS	Chr6	1263679	T-A	HET
SBS	Chr7	25820917	G-T	HET
SBS	Chr7	25820931	G-A	HET
SBS	Chr7	25820932	C-A	HET
SBS	Chr8	286815	C-T	HET
SBS	Chr8	2042645	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g04200
SBS	Chr8	13723492	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g22820
SBS	Chr8	19433763	T-A	HET
SBS	Chr8	24936494	G-C	HET
SBS	Chr9	2947562	G-A	HET
SBS	Chr9	8115897	A-G	HET
SBS	Chr9	11156927	C-T	HET
SBS	Chr9	14714449	T-C	HET
SBS	Chr9	20484694	A-T	HET
SBS	Chr10	6116615	T-C	HET
SBS	Chr10	6116616	A-T	HET
SBS	Chr10	6116617	G-T	HET
SBS	Chr10	8325766	G-T	HET
SBS	Chr12	13401712	T-C	HET
SBS	Chr12	14181309	A-G	HET
SBS	Chr12	19945050	C-A	HET

Deletions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	3784502	3784521	19
Deletion	Chr6	5934324	5934325	1
Deletion	Chr7	6159345	6159346	1
Deletion	Chr1	6216398	6216407	9
Deletion	Chr2	6877454	6877460	6	LOC_Os02g12980
Deletion	Chr6	9792433	9792434	1	LOC_Os06g16890
Deletion	Chr12	10095841	10095852	11
Deletion	Chr7	11152001	11164000	11999	LOC_Os07g18840
Deletion	Chr1	16437920	16437933	13
Deletion	Chr7	16991274	16991275	1
Deletion	Chr3	17325113	17325123	10
Deletion	Chr4	17436802	17436803	1
Deletion	Chr3	19935029	19935040	11
Deletion	Chr11	21246141	21246142	1	LOC_Os11g36140
Deletion	Chr12	21857353	21857355	2	LOC_Os12g35870
Deletion	Chr2	22974326	22974335	9	LOC_Os02g38020
Deletion	Chr1	25339806	25339807	1	LOC_Os01g44200
Deletion	Chr3	27207053	27207058	5
Deletion	Chr5	27549351	27549358	7
Deletion	Chr11	28122543	28122547	4
Deletion	Chr11	28994680	28994686	6
Deletion	Chr2	31044665	31044683	18

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	17454917	17454918	2
Insertion	Chr8	3347906	3347907	2
Insertion	Chr1	15602261	15602261	1	LOC_Os01g27910
Insertion	Chr10	14378282	14378282	1	LOC_Os10g27260
Insertion	Chr12	5626711	5626711	1
Insertion	Chr12	12299657	12299659	3

Inversions: 11

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	270465	270670	LOC_Os08g01410
Inversion	Chr8	1916021	1916275	LOC_Os08g03990
Inversion	Chr1	5525084	6461614
Inversion	Chr1	5525141	6461681
Inversion	Chr3	8906305	8906537	LOC_Os03g16140
Inversion	Chr8	15455314	15455497
Inversion	Chr11	20683322	20683751	LOC_Os11g35290
Inversion	Chr5	25797372	25797623	LOC_Os05g44330
Inversion	Chr6	26529868	26530203	LOC_Os06g44030
Inversion	Chr1	26699599	26699838	LOC_Os01g46810
Inversion	Chr1	41560006	41560239

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr9	6204615	Chr1	23581018
Translocation	Chr12	20502835	Chr8	1952438
Translocation	Chr12	20502839	Chr4	2086082
Translocation	Chr11	23045617	Chr2	8932767
Translocation	Chr4	35463158	Chr3	12863838

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