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Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12876216	C-T	Homo
SBS	Chr1	1875513	G-A	Homo
SBS	Chr1	36218662	A-T	HET
SBS	Chr1	3905569	T-A	Homo
SBS	Chr1	5472123	G-A	HET
SBS	Chr1	5883585	T-A	HET
SBS	Chr10	1215766	T-C	Homo
SBS	Chr10	17026749	T-C	HET
SBS	Chr10	17231085	C-T	HET
SBS	Chr10	6741965	C-A	HET
SBS	Chr10	7325750	A-G	HET
SBS	Chr11	10483476	C-G	HET
SBS	Chr11	15384128	G-A	HET
SBS	Chr11	20872669	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os11g35590
SBS	Chr11	21945849	C-T	HET	STOP_GAINED	LOC_Os11g37170
SBS	Chr11	8645212	C-A	HET
SBS	Chr11	9588023	A-T	HET
SBS	Chr12	14646485	C-T	HET
SBS	Chr12	22416934	C-T	HET
SBS	Chr12	23451397	G-T	HET
SBS	Chr3	7812527	G-T	Homo
SBS	Chr3	7812528	A-T	Homo
SBS	Chr4	15978758	C-A	Homo
SBS	Chr4	17405105	A-G	HET
SBS	Chr5	11162687	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g19220
SBS	Chr5	7142691	T-C	HET
SBS	Chr6	12229829	C-A	Homo
SBS	Chr7	18011209	G-T	HET
SBS	Chr7	245140	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g01390
SBS	Chr8	26873964	C-T	Homo
SBS	Chr9	10514319	T-C	Homo
SBS	Chr9	15516507	C-T	HET
SBS	Chr9	17588625	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g28930
SBS	Chr9	17588626	C-A	HET

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	440821	440822	1
Deletion	Chr7	995004	995015	11
Deletion	Chr3	1221424	1221437	13
Deletion	Chr2	1271720	1271722	2
Deletion	Chr2	2595182	2595194	12	LOC_Os02g05400
Deletion	Chr1	4681845	4681853	8	LOC_Os01g09246
Deletion	Chr4	6863849	6863858	9
Deletion	Chr8	8130054	8130056	2
Deletion	Chr1	12660865	12660875	10
Deletion	Chr11	12828951	12828952	1
Deletion	Chr2	13707640	13707642	2
Deletion	Chr4	14265574	14265586	12	LOC_Os04g24820
Deletion	Chr3	18698523	18698527	4
Deletion	Chr11	20491743	20491766	23
Deletion	Chr4	20818532	20818533	1	LOC_Os04g34370
Deletion	Chr1	23494088	23494093	5
Deletion	Chr7	25615351	25615359	8
Deletion	Chr1	31001960	31001965	5

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr12	13921592	13921594	3
Insertion	Chr4	29377951	29377952	2

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	5895207	6243676
Inversion	Chr11	5895211	6243679
Inversion	Chr3	15050091	15766423	2
Inversion	Chr3	15063839	15766422	LOC_Os03g27480

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	5767509	Chr1	6544940
Translocation	Chr4	16584293	Chr2	6111565	2
Translocation	Chr8	20159479	Chr6	3357330	LOC_Os08g32540
Translocation	Chr5	20725910	Chr2	5558233	LOC_Os05g34880
Translocation	Chr7	22897732	Chr3	11855839
Translocation	Chr11	25591107	Chr1	12643115	LOC_Os11g42490
Translocation	Chr11	25591109	Chr1	12641890	LOC_Os11g42490

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