Search Nipponbare
| Mutant Information |
|---|
| Mutant Name | FN3850-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3850-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 20
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 16974850 | T-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os01g31030 |
| SBS | Chr1 | 26023680 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g45810 |
| SBS | Chr10 | 16736571 | G-A | HET | ||
| SBS | Chr10 | 22905633 | G-T | Homo | ||
| SBS | Chr12 | 16399957 | T-G | HET | ||
| SBS | Chr12 | 18287852 | T-C | HET | ||
| SBS | Chr12 | 8751547 | C-T | HET | ||
| SBS | Chr2 | 19517941 | C-T | HET | ||
| SBS | Chr2 | 3685429 | G-A | HET | ||
| SBS | Chr3 | 18762138 | C-T | HET | ||
| SBS | Chr4 | 5129263 | C-T | HET | ||
| SBS | Chr5 | 8825879 | C-T | Homo | ||
| SBS | Chr6 | 27465987 | A-T | HET | ||
| SBS | Chr6 | 29351475 | A-T | HET | ||
| SBS | Chr7 | 26760017 | G-A | HET | ||
| SBS | Chr8 | 4698849 | T-G | Homo | ||
| SBS | Chr8 | 5526941 | G-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os08g09540 |
| SBS | Chr8 | 846961 | C-T | Homo | ||
| SBS | Chr9 | 10456242 | C-T | HET | ||
| SBS | Chr9 | 7491890 | A-T | HET |
Deletions: 14
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 947239 | 947246 | 7 | |
| Deletion | Chr1 | 1091657 | 1091658 | 1 | |
| Deletion | Chr1 | 1985833 | 1985849 | 16 | LOC_Os01g04460 |
| Deletion | Chr10 | 5408001 | 5408006 | 5 | |
| Deletion | Chr2 | 6850975 | 6850978 | 3 | |
| Deletion | Chr5 | 7366707 | 7366716 | 9 | |
| Deletion | Chr5 | 8799761 | 8799768 | 7 | LOC_Os05g15550 |
| Deletion | Chr5 | 8865875 | 8865878 | 3 | |
| Deletion | Chr5 | 9920104 | 9920112 | 8 | |
| Deletion | Chr8 | 10165044 | 10165055 | 11 | |
| Deletion | Chr9 | 12770638 | 12770640 | 2 | |
| Deletion | Chr4 | 17525586 | 17525608 | 22 | |
| Deletion | Chr10 | 18712540 | 18712546 | 6 | |
| Deletion | Chr11 | 19108864 | 19108867 | 3 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 20737222 | 20737222 | 1 | |
| Insertion | Chr2 | 24758615 | 24758615 | 1 | |
| Insertion | Chr8 | 2334689 | 2334690 | 2 |
Inversions: 6
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr5 | 4076927 | 4350074 | 2 |
| Inversion | Chr5 | 4095016 | 4350073 | LOC_Os05g08040 |
| Inversion | Chr5 | 4095020 | 4544890 | LOC_Os05g08320 |
| Inversion | Chr5 | 4346438 | 4544880 | 2 |
| Inversion | Chr11 | 10922669 | 11444413 | LOC_Os11g19864 |
| Inversion | Chr6 | 23276916 | 23280254 | LOC_Os06g39210 |
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 581708 | Chr9 | 19096993 | |
| Translocation | Chr12 | 10087162 | Chr8 | 21909928 | |
| Translocation | Chr3 | 13643897 | Chr1 | 2804249 | LOC_Os01g05850 |
| Translocation | Chr10 | 14392059 | Chr6 | 13904115 | |
| Translocation | Chr12 | 21132012 | Chr5 | 7298546 | |
| Translocation | Chr8 | 27804406 | Chr2 | 15723612 | 2 |