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| Mutant Information |
|---|
| Mutant Name | FN3853-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3853-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 26
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 10579770 | G-A | Homo | ||
| SBS | Chr1 | 24388993 | G-T | Homo | ||
| SBS | Chr11 | 17931517 | C-T | HET | ||
| SBS | Chr11 | 28124753 | T-C | HET | ||
| SBS | Chr11 | 6039644 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os11g10940 |
| SBS | Chr12 | 5396191 | C-T | Homo | STOP_GAINED | LOC_Os12g10210 |
| SBS | Chr2 | 6484110 | T-C | Homo | ||
| SBS | Chr3 | 21846200 | G-A | HET | ||
| SBS | Chr4 | 27899864 | C-T | Homo | ||
| SBS | Chr5 | 13450409 | T-C | HET | ||
| SBS | Chr5 | 23372270 | A-G | HET | ||
| SBS | Chr5 | 24400404 | G-A | HET | ||
| SBS | Chr5 | 363907 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os05g01610 |
| SBS | Chr5 | 7195889 | A-G | Homo | ||
| SBS | Chr5 | 9533266 | C-T | HET | ||
| SBS | Chr6 | 12672722 | C-T | HET | ||
| SBS | Chr6 | 15982574 | G-A | HET | ||
| SBS | Chr6 | 17652576 | T-A | HET | ||
| SBS | Chr6 | 25541193 | C-T | HET | ||
| SBS | Chr6 | 26140696 | A-G | HET | ||
| SBS | Chr7 | 1439544 | C-G | HET | ||
| SBS | Chr7 | 16221643 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os07g27800 |
| SBS | Chr7 | 4545089 | G-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os07g08810 |
| SBS | Chr7 | 8329575 | G-A | Homo | ||
| SBS | Chr7 | 8437178 | G-T | Homo | ||
| SBS | Chr8 | 13871607 | A-G | HET |
Deletions: 14
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr11 | 1176535 | 1176540 | 5 | LOC_Os11g03230 |
| Deletion | Chr6 | 4142829 | 4142843 | 14 | |
| Deletion | Chr7 | 6504446 | 6504453 | 7 | |
| Deletion | Chr4 | 7566794 | 7566799 | 5 | |
| Deletion | Chr1 | 8446689 | 8446692 | 3 | |
| Deletion | Chr1 | 9032805 | 9032806 | 1 | |
| Deletion | Chr8 | 11181878 | 11181879 | 1 | LOC_Os08g18730 |
| Deletion | Chr8 | 11350742 | 11350908 | 166 | |
| Deletion | Chr8 | 13871609 | 13871610 | 1 | |
| Deletion | Chr3 | 14700134 | 14700142 | 8 | |
| Deletion | Chr7 | 20025703 | 20025704 | 1 | LOC_Os07g33500 |
| Deletion | Chr2 | 26394413 | 26394418 | 5 | LOC_Os02g43740 |
| Deletion | Chr7 | 27496284 | 27496285 | 1 | |
| Deletion | Chr4 | 33601908 | 33601915 | 7 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr5 | 6397335 | 6397347 | 13 |
Inversions: 6
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr6 | 9024619 | 9034346 | LOC_Os06g15910 |
| Inversion | Chr6 | 9024627 | 9035485 | LOC_Os06g15910 |
| Inversion | Chr6 | 15932055 | 16046910 | LOC_Os06g28060 |
| Inversion | Chr7 | 19937902 | 19968209 | |
| Inversion | Chr7 | 23431713 | 23783833 | LOC_Os07g39680 |
| Inversion | Chr7 | 23431727 | 23783837 | 2 |
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr7 | 862966 | Chr5 | 4191222 | |
| Translocation | Chr6 | 10140352 | Chr4 | 27965907 | LOC_Os04g47100 |
| Translocation | Chr4 | 13170888 | Chr3 | 30735507 | |
| Translocation | Chr8 | 13640912 | Chr7 | 13573677 | 2 |
| Translocation | Chr6 | 15821085 | Chr5 | 20535401 | LOC_Os06g27890 |
| Translocation | Chr6 | 15821865 | Chr5 | 20538840 | 2 |
| Translocation | Chr12 | 18667591 | Chr7 | 10080107 |