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Mutant Information

Variant Information

Single base substitutions: 29

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12387750	A-G	HET
SBS	Chr1	25633148	G-A	HET
SBS	Chr1	37371868	T-C	HET
SBS	Chr10	17932697	G-T	HET
SBS	Chr10	21732320	C-T	Homo
SBS	Chr11	16385220	C-T	HET
SBS	Chr11	9844220	G-A	HET
SBS	Chr2	17060666	C-T	Homo
SBS	Chr2	8353590	C-T	HET
SBS	Chr3	22516289	C-T	HET
SBS	Chr3	31237998	G-A	HET	STOP_GAINED	LOC_Os03g54950
SBS	Chr4	12289167	T-A	Homo
SBS	Chr4	27415384	C-T	HET
SBS	Chr4	5621150	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g10380
SBS	Chr5	310722	A-T	HET
SBS	Chr5	9741571	C-A	HET
SBS	Chr6	14341612	G-A	Homo
SBS	Chr6	14935493	C-T	Homo
SBS	Chr6	16671814	T-C	HET
SBS	Chr6	20321631	G-A	HET
SBS	Chr6	20641237	T-C	HET
SBS	Chr7	16324490	A-T	HET
SBS	Chr7	7511055	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os07g13120
SBS	Chr8	10418243	C-T	HET
SBS	Chr8	10443577	C-G	HET
SBS	Chr8	12087836	T-C	HET
SBS	Chr8	1488485	C-T	HET
SBS	Chr8	21405748	G-T	HET
SBS	Chr8	5534198	T-C	HET

Deletions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	1276692	1276693	1	LOC_Os08g02930
Deletion	Chr9	1690633	1690636	3	LOC_Os09g03420
Deletion	Chr10	5355373	5355377	4
Deletion	Chr1	9783101	9783108	7
Deletion	Chr6	10053579	10053585	6
Deletion	Chr1	12325353	12325362	9
Deletion	Chr4	12882343	12882345	2
Deletion	Chr8	13657864	13657873	9
Deletion	Chr11	15329939	15329947	8
Deletion	Chr10	16068388	16068391	3
Deletion	Chr2	16318001	16332000	13999	3
Deletion	Chr2	16546001	16565000	18999	2
Deletion	Chr2	17072001	17083000	10999	LOC_Os02g28850
Deletion	Chr8	19991745	19991762	17	LOC_Os08g32260
Deletion	Chr10	20676855	20676866	11
Deletion	Chr9	21711001	21722000	10999	LOC_Os09g37680
Deletion	Chr7	22997727	22997731	4
Deletion	Chr6	26196493	26196500	7
Deletion	Chr3	35607695	35607696	1
Deletion	Chr1	38623997	38624005	8

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	407975	408140	166	LOC_Os10g01610
Insertion	Chr7	27604320	27604327	8	LOC_Os07g46260
Insertion	Chr7	28467178	28467179	2

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	13508501	13509264
Inversion	Chr7	13508507	13509267
Inversion	Chr2	16332018	17083154
Inversion	Chr2	16546172	17071993
Inversion	Chr2	30005110	30053292	LOC_Os02g49140
Inversion	Chr2	30005120	30053307	LOC_Os02g49140

Translocations: 11

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	6761007	Chr7	6428284	LOC_Os07g11640
Translocation	Chr8	7741840	Chr6	11244082
Translocation	Chr8	7741876	Chr6	11242918
Translocation	Chr10	13923821	Chr2	16570470	LOC_Os10g26660
Translocation	Chr10	13923823	Chr2	16550309	2
Translocation	Chr11	17890572	Chr2	8032374	LOC_Os11g30720
Translocation	Chr7	22455833	Chr2	28233228
Translocation	Chr3	24620783	Chr2	16550584	LOC_Os02g27960
Translocation	Chr12	24941818	Chr9	21711275	LOC_Os12g40279
Translocation	Chr12	24941827	Chr9	21706392	LOC_Os12g40279
Translocation	Chr12	27080875	Chr2	12743656	LOC_Os02g21490

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