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| Mutant Information |
|---|
| Mutant Name | FN3859-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3859-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 36
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 21866068 | G-A | HET | ||
| SBS | Chr1 | 9482799 | A-T | HET | ||
| SBS | Chr11 | 15475615 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os11g26920 |
| SBS | Chr11 | 6432939 | C-T | HET | ||
| SBS | Chr12 | 16299036 | A-T | HET | ||
| SBS | Chr12 | 16470179 | T-C | HET | ||
| SBS | Chr12 | 17052174 | T-C | HET | ||
| SBS | Chr12 | 4326063 | A-T | HET | ||
| SBS | Chr12 | 8456397 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os12g14780 |
| SBS | Chr2 | 135171 | C-T | HET | ||
| SBS | Chr2 | 22208334 | G-A | HET | ||
| SBS | Chr3 | 12039010 | A-T | HET | ||
| SBS | Chr3 | 14641911 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os03g25590 |
| SBS | Chr3 | 21811511 | G-C | HET | ||
| SBS | Chr3 | 26825775 | C-T | Homo | ||
| SBS | Chr3 | 29286115 | G-C | HET | ||
| SBS | Chr3 | 6532126 | A-C | HET | ||
| SBS | Chr4 | 26852185 | G-A | HET | ||
| SBS | Chr5 | 18412484 | T-C | Homo | ||
| SBS | Chr5 | 2280776 | C-A | HET | ||
| SBS | Chr5 | 4258659 | T-A | HET | ||
| SBS | Chr5 | 6295826 | C-G | HET | ||
| SBS | Chr5 | 858141 | G-T | HET | ||
| SBS | Chr6 | 21138658 | C-T | HET | ||
| SBS | Chr6 | 23942246 | T-A | HET | ||
| SBS | Chr6 | 315420 | C-T | HET | ||
| SBS | Chr6 | 7113138 | C-A | HET | ||
| SBS | Chr6 | 9394422 | A-G | Homo | ||
| SBS | Chr7 | 1437986 | G-C | Homo | ||
| SBS | Chr7 | 5641495 | T-C | Homo | ||
| SBS | Chr8 | 16906244 | A-G | Homo | ||
| SBS | Chr8 | 22788510 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os08g36160 |
| SBS | Chr8 | 2674636 | T-C | HET | ||
| SBS | Chr8 | 9010300 | G-A | Homo | ||
| SBS | Chr9 | 11200974 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os09g18240 |
| SBS | Chr9 | 4950082 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os09g09240 |
Deletions: 10
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr11 | 1143125 | 1143129 | 4 | |
| Deletion | Chr5 | 7263194 | 7263195 | 1 | |
| Deletion | Chr12 | 8491772 | 8491838 | 66 | |
| Deletion | Chr11 | 12069463 | 12069464 | 1 | |
| Deletion | Chr9 | 14129172 | 14129184 | 12 | |
| Deletion | Chr12 | 14137706 | 14137707 | 1 | |
| Deletion | Chr9 | 14157224 | 14157230 | 6 | |
| Deletion | Chr8 | 16631031 | 16631035 | 4 | |
| Deletion | Chr1 | 22567184 | 22567195 | 11 | LOC_Os01g40010 |
| Deletion | Chr11 | 23049550 | 23049551 | 1 |
Insertions: 5
Inversions: 5
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr10 | 1395246 | 1501261 | |
| Inversion | Chr10 | 1395261 | 1501269 | |
| Inversion | Chr7 | 5687041 | 5687518 | |
| Inversion | Chr12 | 8685897 | 8686294 | |
| Inversion | Chr12 | 16182211 | 16253329 | LOC_Os12g27490 |
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr3 | 9428067 | Chr1 | 5089284 | |
| Translocation | Chr10 | 9913223 | Chr2 | 32908783 | 2 |
| Translocation | Chr6 | 11438183 | Chr4 | 742202 | |
| Translocation | Chr12 | 15191193 | Chr4 | 18885976 | |
| Translocation | Chr11 | 15551931 | Chr7 | 11770302 | |
| Translocation | Chr12 | 25572484 | Chr5 | 15911182 |