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| Mutant Information |
|---|
| Mutant Name | FN3861-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3861-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 35
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 12926505 | C-T | Homo | ||
| SBS | Chr1 | 22974866 | T-C | Homo | ||
| SBS | Chr1 | 35227883 | T-A | Homo | ||
| SBS | Chr1 | 38710315 | G-T | HET | ||
| SBS | Chr1 | 7444877 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g13360 |
| SBS | Chr1 | 7930209 | T-A | Homo | ||
| SBS | Chr10 | 13962175 | A-G | HET | ||
| SBS | Chr10 | 6054046 | G-A | HET | ||
| SBS | Chr11 | 23278972 | G-T | Homo | ||
| SBS | Chr11 | 6222763 | C-T | Homo | ||
| SBS | Chr12 | 13832562 | T-C | HET | ||
| SBS | Chr2 | 18575861 | A-G | HET | ||
| SBS | Chr2 | 2029104 | G-A | HET | ||
| SBS | Chr2 | 938271 | C-A | HET | ||
| SBS | Chr3 | 13186527 | C-A | HET | ||
| SBS | Chr3 | 33601997 | T-A | Homo | ||
| SBS | Chr4 | 16873381 | C-T | HET | ||
| SBS | Chr4 | 28365188 | T-C | HET | ||
| SBS | Chr4 | 34207617 | G-T | Homo | ||
| SBS | Chr4 | 7666972 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os04g13740 |
| SBS | Chr5 | 1106401 | C-A | HET | ||
| SBS | Chr5 | 12912403 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os05g22760 |
| SBS | Chr5 | 15970410 | G-A | HET | ||
| SBS | Chr5 | 9569196 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os05g16800 |
| SBS | Chr7 | 16288553 | C-T | HET | ||
| SBS | Chr7 | 22510362 | C-G | Homo | ||
| SBS | Chr8 | 12202112 | T-C | HET | ||
| SBS | Chr8 | 1366398 | G-A | HET | ||
| SBS | Chr8 | 18530802 | C-T | HET | ||
| SBS | Chr8 | 18864686 | G-A | HET | ||
| SBS | Chr8 | 20030597 | T-C | Homo | ||
| SBS | Chr8 | 4279491 | A-T | HET | ||
| SBS | Chr8 | 6939560 | G-A | HET | ||
| SBS | Chr9 | 3959263 | G-A | HET | ||
| SBS | Chr9 | 6881049 | C-T | Homo |
Deletions: 7
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr5 | 12911939 | 12911940 | 1 | LOC_Os05g22760 |
| Deletion | Chr8 | 16115740 | 16115748 | 8 | |
| Deletion | Chr7 | 17683546 | 17683557 | 11 | |
| Deletion | Chr2 | 23240001 | 23250000 | 9999 | 3 |
| Deletion | Chr1 | 25046557 | 25046568 | 11 | |
| Deletion | Chr7 | 25444785 | 25444791 | 6 | |
| Deletion | Chr1 | 35957195 | 35957208 | 13 |
Insertions: 5
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 29862972 | 29862972 | 1 | |
| Insertion | Chr3 | 20533415 | 20533423 | 9 | |
| Insertion | Chr7 | 11919344 | 11919344 | 1 | LOC_Os07g20620 |
| Insertion | Chr7 | 27351637 | 27351639 | 3 | |
| Insertion | Chr9 | 2935867 | 2935867 | 1 |
Inversions: 5
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr8 | 6368090 | 6940213 | LOC_Os08g10810 |
| Inversion | Chr10 | 11952859 | 11999646 | |
| Inversion | Chr10 | 11952867 | 11999648 | |
| Inversion | Chr1 | 35709179 | 35959006 | |
| Inversion | Chr1 | 35851624 | 35959006 | LOC_Os01g61930 |
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr5 | 1149376 | Chr4 | 24555658 | |
| Translocation | Chr8 | 2077294 | Chr6 | 30888016 | 2 |
| Translocation | Chr8 | 2077296 | Chr6 | 30887526 | 2 |
| Translocation | Chr12 | 4416697 | Chr8 | 18415250 | LOC_Os08g29980 |
| Translocation | Chr9 | 7352952 | Chr5 | 1239355 | LOC_Os09g12800 |
| Translocation | Chr5 | 9568608 | Chr4 | 23655111 | LOC_Os05g16800 |
| Translocation | Chr8 | 9703302 | Chr6 | 18191822 |