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| Mutant Information |
|---|
| Mutant Name | FN3862-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3862-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 24
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 39129615 | T-A | HET | ||
| SBS | Chr10 | 12213495 | G-A | HET | ||
| SBS | Chr10 | 12401341 | A-T | HET | ||
| SBS | Chr10 | 6447978 | T-G | HET | ||
| SBS | Chr11 | 10511089 | C-T | Homo | ||
| SBS | Chr11 | 14959101 | G-C | Homo | ||
| SBS | Chr12 | 4084316 | T-A | Homo | ||
| SBS | Chr12 | 9957165 | G-A | HET | ||
| SBS | Chr2 | 20707871 | C-A | HET | ||
| SBS | Chr2 | 27690239 | G-A | HET | ||
| SBS | Chr2 | 27690240 | T-A | HET | ||
| SBS | Chr2 | 29072276 | T-G | HET | ||
| SBS | Chr2 | 34566539 | A-T | Homo | ||
| SBS | Chr4 | 16189568 | A-G | HET | ||
| SBS | Chr6 | 12489137 | C-T | HET | ||
| SBS | Chr6 | 14623967 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os06g24960 |
| SBS | Chr6 | 17852453 | G-A | HET | ||
| SBS | Chr6 | 27379918 | G-A | HET | ||
| SBS | Chr7 | 6959375 | C-T | HET | ||
| SBS | Chr8 | 1347904 | G-A | Homo | ||
| SBS | Chr8 | 1816990 | G-A | Homo | ||
| SBS | Chr8 | 234713 | C-T | HET | ||
| SBS | Chr9 | 14044108 | T-A | Homo | ||
| SBS | Chr9 | 19500492 | T-G | HET |
Deletions: 17
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr11 | 835001 | 1044000 | 208999 | 39 |
| Deletion | Chr9 | 2859960 | 2859961 | 1 | |
| Deletion | Chr12 | 4203524 | 4203530 | 6 | |
| Deletion | Chr11 | 5485211 | 5485228 | 17 | |
| Deletion | Chr12 | 9106956 | 9106958 | 2 | |
| Deletion | Chr5 | 9493001 | 9504000 | 10999 | LOC_Os05g16710 |
| Deletion | Chr5 | 9509001 | 9667000 | 157999 | 20 |
| Deletion | Chr5 | 9676001 | 9697000 | 20999 | 3 |
| Deletion | Chr5 | 9708001 | 10002000 | 293999 | 42 |
| Deletion | Chr5 | 10026001 | 10266000 | 239999 | 35 |
| Deletion | Chr5 | 10270001 | 10609000 | 338999 | 52 |
| Deletion | Chr11 | 10511090 | 10511091 | 1 | |
| Deletion | Chr8 | 16014318 | 16014321 | 3 | |
| Deletion | Chr10 | 22797856 | 22797862 | 6 | |
| Deletion | Chr8 | 26012945 | 26012968 | 23 | |
| Deletion | Chr4 | 28421718 | 28421719 | 1 | |
| Deletion | Chr6 | 30966467 | 30966473 | 6 |
Insertions: 3
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 19870663 | 19870665 | 3 | LOC_Os11g33970 |
| Insertion | Chr12 | 7961499 | 7961499 | 1 | |
| Insertion | Chr9 | 8348239 | 8348239 | 1 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr4 | 7227953 | 7240124 | LOC_Os04g13120 |
| Inversion | Chr4 | 7227955 | 7240124 | LOC_Os04g13120 |
| Inversion | Chr3 | 30923580 | 30923927 |
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 13702654 | Chr6 | 26236666 | LOC_Os06g43620 |
| Translocation | Chr12 | 13702670 | Chr6 | 26246634 | LOC_Os06g43630 |
| Translocation | Chr8 | 19690427 | Chr6 | 13904216 | |
| Translocation | Chr4 | 22148913 | Chr3 | 15326022 | |
| Translocation | Chr7 | 23610215 | Chr1 | 40306138 | |
| Translocation | Chr11 | 26960166 | Chr5 | 27709523 | LOC_Os11g44590 |
| Translocation | Chr11 | 27005713 | Chr2 | 15294664 |