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| Mutant Information |
|---|
| Mutant Name | FN3863-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3863-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 32
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 18640090 | A-C | HET | ||
| SBS | Chr1 | 36603759 | G-T | HET | ||
| SBS | Chr1 | 43140227 | A-G | Homo | ||
| SBS | Chr1 | 8284863 | T-G | HET | ||
| SBS | Chr11 | 14216482 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os11g24964 |
| SBS | Chr11 | 14653597 | C-T | Homo | ||
| SBS | Chr11 | 19582689 | T-A | Homo | ||
| SBS | Chr12 | 18045389 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os12g30120 |
| SBS | Chr12 | 18885257 | C-T | HET | ||
| SBS | Chr12 | 26221195 | G-A | HET | ||
| SBS | Chr12 | 3478755 | G-T | Homo | ||
| SBS | Chr2 | 12750261 | T-C | HET | ||
| SBS | Chr2 | 17232817 | T-A | HET | ||
| SBS | Chr2 | 20526845 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os02g34300 |
| SBS | Chr3 | 12981921 | G-T | HET | ||
| SBS | Chr3 | 20771054 | T-A | HET | ||
| SBS | Chr3 | 34410600 | C-A | HET | ||
| SBS | Chr3 | 5470978 | A-T | Homo | ||
| SBS | Chr3 | 8993190 | A-G | HET | ||
| SBS | Chr4 | 1144694 | G-C | HET | ||
| SBS | Chr4 | 17147081 | G-T | HET | ||
| SBS | Chr4 | 20394938 | G-A | HET | ||
| SBS | Chr4 | 2222378 | T-C | HET | ||
| SBS | Chr4 | 7279312 | G-A | Homo | ||
| SBS | Chr5 | 627896 | A-T | Homo | ||
| SBS | Chr7 | 3359898 | A-C | HET | ||
| SBS | Chr7 | 4212733 | G-A | HET | ||
| SBS | Chr8 | 12793387 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os08g21460 |
| SBS | Chr8 | 27355436 | C-G | HET | ||
| SBS | Chr9 | 19173205 | G-T | HET | ||
| SBS | Chr9 | 3787683 | T-C | HET | ||
| SBS | Chr9 | 5457301 | T-G | HET |
Deletions: 10
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 2806869 | 2806870 | 1 | |
| Deletion | Chr4 | 3185698 | 3185703 | 5 | |
| Deletion | Chr3 | 8596638 | 8596643 | 5 | |
| Deletion | Chr6 | 11101311 | 11101329 | 18 | |
| Deletion | Chr8 | 12486930 | 12486931 | 1 | LOC_Os08g20790 |
| Deletion | Chr8 | 16474622 | 16474623 | 1 | LOC_Os08g26970 |
| Deletion | Chr7 | 17632100 | 17632179 | 79 | |
| Deletion | Chr5 | 21713122 | 21713124 | 2 | |
| Deletion | Chr11 | 24307317 | 24307318 | 1 | LOC_Os11g40690 |
| Deletion | Chr3 | 30315290 | 30315298 | 8 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 30772618 | 30772618 | 1 | LOC_Os01g53590 |
| Insertion | Chr11 | 20623995 | 20623995 | 1 | |
| Insertion | Chr12 | 7427385 | 7427437 | 53 | |
| Insertion | Chr4 | 29016773 | 29016773 | 1 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr12 | 22242899 | 22476572 | |
| Inversion | Chr12 | 22242905 | 22476573 |
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 5743804 | Chr10 | 12207894 | |
| Translocation | Chr6 | 9794993 | Chr4 | 17545681 | LOC_Os04g29530 |
| Translocation | Chr12 | 9917834 | Chr4 | 6963416 | LOC_Os12g17320 |
| Translocation | Chr11 | 10561571 | Chr10 | 1626223 | LOC_Os10g03660 |
| Translocation | Chr11 | 19768873 | Chr6 | 2355080 | |
| Translocation | Chr6 | 21366154 | Chr4 | 150582 | |
| Translocation | Chr11 | 27991937 | Chr10 | 12685622 | LOC_Os11g46230 |