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| Mutant Information |
|---|
| Mutant Name | FN3864-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3864-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 38
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 17201487 | G-C | Homo | ||
| SBS | Chr1 | 42802445 | G-T | Homo | ||
| SBS | Chr10 | 11503697 | C-T | Homo | ||
| SBS | Chr10 | 16389919 | A-T | HET | ||
| SBS | Chr10 | 17243001 | A-T | Homo | ||
| SBS | Chr10 | 6783516 | T-C | HET | ||
| SBS | Chr10 | 6805727 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os10g12220 |
| SBS | Chr11 | 2268959 | T-C | HET | ||
| SBS | Chr11 | 23768054 | C-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os11g39870 |
| SBS | Chr12 | 17695385 | A-T | Homo | ||
| SBS | Chr12 | 25666364 | C-T | HET | ||
| SBS | Chr2 | 22073402 | A-T | HET | ||
| SBS | Chr2 | 32764606 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os02g53550 |
| SBS | Chr2 | 34826554 | G-A | HET | ||
| SBS | Chr2 | 8477017 | G-T | HET | ||
| SBS | Chr3 | 15126203 | C-A | HET | ||
| SBS | Chr3 | 15126204 | T-C | HET | ||
| SBS | Chr3 | 15399620 | T-G | HET | ||
| SBS | Chr3 | 7583379 | C-A | HET | ||
| SBS | Chr4 | 4579360 | G-A | HET | ||
| SBS | Chr4 | 8081563 | G-A | HET | ||
| SBS | Chr5 | 12651704 | T-G | HET | ||
| SBS | Chr5 | 14846226 | G-T | Homo | ||
| SBS | Chr5 | 28274643 | G-A | Homo | ||
| SBS | Chr5 | 6072944 | C-T | HET | ||
| SBS | Chr5 | 9548115 | G-A | HET | ||
| SBS | Chr6 | 16196322 | A-T | HET | ||
| SBS | Chr6 | 21585244 | C-T | HET | ||
| SBS | Chr6 | 7433529 | C-T | HET | ||
| SBS | Chr6 | 9414310 | T-A | HET | ||
| SBS | Chr7 | 10344642 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os07g17500 |
| SBS | Chr7 | 784769 | T-A | Homo | ||
| SBS | Chr7 | 784770 | A-T | Homo | ||
| SBS | Chr8 | 17157657 | G-C | Homo | ||
| SBS | Chr8 | 25773294 | G-A | HET | ||
| SBS | Chr8 | 3821088 | G-T | HET | ||
| SBS | Chr9 | 14756658 | G-A | Homo | ||
| SBS | Chr9 | 5495450 | G-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os09g10080 |
Deletions: 10
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr2 | 630751 | 630752 | 1 | |
| Deletion | Chr3 | 3060289 | 3060290 | 1 | |
| Deletion | Chr5 | 5040100 | 5040105 | 5 | LOC_Os05g09070 |
| Deletion | Chr3 | 8741753 | 8741760 | 7 | |
| Deletion | Chr9 | 10162652 | 10162664 | 12 | |
| Deletion | Chr7 | 12342888 | 12342905 | 17 | LOC_Os07g22080 |
| Deletion | Chr11 | 16129320 | 16129328 | 8 | |
| Deletion | Chr6 | 20752209 | 20752210 | 1 | LOC_Os06g35560 |
| Deletion | Chr8 | 23323275 | 23323276 | 1 | |
| Deletion | Chr1 | 24508015 | 24508019 | 4 |
No Insertion
Inversions: 7
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr5 | 2345354 | 2345573 | LOC_Os05g04870 |
| Inversion | Chr1 | 7850477 | 7850917 | |
| Inversion | Chr7 | 17270485 | 17270937 | LOC_Os07g29420 |
| Inversion | Chr7 | 18733173 | 18733702 | LOC_Os07g31550 |
| Inversion | Chr9 | 19120147 | 19120643 | LOC_Os09g32030 |
| Inversion | Chr4 | 21982870 | 21982988 | |
| Inversion | Chr12 | 26468082 | 26468396 |
Translocations: 8
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr6 | 1180853 | Chr4 | 10706854 | LOC_Os06g03160 |
| Translocation | Chr12 | 9802432 | Chr1 | 530979 | |
| Translocation | Chr7 | 12695857 | Chr2 | 7016804 | LOC_Os07g22560 |
| Translocation | Chr7 | 12696333 | Chr2 | 7016800 | LOC_Os07g22560 |
| Translocation | Chr8 | 14225174 | Chr3 | 15147361 | LOC_Os03g26520 |
| Translocation | Chr8 | 15255368 | Chr6 | 14058712 | |
| Translocation | Chr6 | 17433134 | Chr1 | 11574638 | |
| Translocation | Chr8 | 27378378 | Chr6 | 10369648 | LOC_Os08g43320 |