Search Nipponbare
| Mutant Information |
|---|
| Mutant Name | FN3865-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3865-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 24
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 40000919 | G-A | HET | ||
| SBS | Chr10 | 12407415 | C-T | HET | ||
| SBS | Chr10 | 220657 | C-T | HET | ||
| SBS | Chr11 | 11179822 | G-A | Homo | ||
| SBS | Chr12 | 15611389 | T-A | Homo | ||
| SBS | Chr12 | 21828338 | G-A | Homo | ||
| SBS | Chr12 | 8421812 | G-A | Homo | ||
| SBS | Chr2 | 10029278 | G-A | HET | ||
| SBS | Chr2 | 26392004 | C-T | Homo | ||
| SBS | Chr3 | 258794 | C-G | HET | ||
| SBS | Chr3 | 534465 | A-T | Homo | ||
| SBS | Chr4 | 16806431 | A-G | HET | ||
| SBS | Chr4 | 2870452 | G-A | HET | ||
| SBS | Chr4 | 30076207 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os04g50850 |
| SBS | Chr4 | 3436141 | C-T | HET | ||
| SBS | Chr5 | 25302849 | T-C | HET | ||
| SBS | Chr5 | 6137256 | C-T | HET | ||
| SBS | Chr6 | 11514941 | A-T | Homo | ||
| SBS | Chr7 | 16444807 | G-T | Homo | ||
| SBS | Chr7 | 16980296 | T-C | Homo | ||
| SBS | Chr7 | 18226425 | G-A | Homo | ||
| SBS | Chr8 | 25308394 | C-T | HET | ||
| SBS | Chr9 | 2838604 | C-A | HET | ||
| SBS | Chr9 | 8362256 | G-A | Homo |
Deletions: 15
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr7 | 1058082 | 1058103 | 21 | |
| Deletion | Chr3 | 2782167 | 2782168 | 1 | |
| Deletion | Chr12 | 3856789 | 3856796 | 7 | |
| Deletion | Chr4 | 8601588 | 8601590 | 2 | |
| Deletion | Chr5 | 12289400 | 12289402 | 2 | |
| Deletion | Chr12 | 17342353 | 17342360 | 7 | |
| Deletion | Chr1 | 20092347 | 20092348 | 1 | |
| Deletion | Chr2 | 22473319 | 22473320 | 1 | |
| Deletion | Chr11 | 23380555 | 23380557 | 2 | |
| Deletion | Chr4 | 23954490 | 23954493 | 3 | |
| Deletion | Chr4 | 24424556 | 24424562 | 6 | LOC_Os04g41180 |
| Deletion | Chr2 | 25920001 | 25976000 | 55999 | 9 |
| Deletion | Chr12 | 26886516 | 26886530 | 14 | |
| Deletion | Chr12 | 27310809 | 27310828 | 19 | LOC_Os12g44030 |
| Deletion | Chr2 | 27890015 | 27890020 | 5 |
Insertions: 12
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 5762682 | 5762753 | 72 | |
| Insertion | Chr11 | 10820035 | 10820035 | 1 | |
| Insertion | Chr3 | 26761919 | 26762172 | 254 | |
| Insertion | Chr5 | 10696518 | 10696518 | 1 | |
| Insertion | Chr5 | 8423381 | 8423383 | 3 | |
| Insertion | Chr6 | 17523889 | 17523892 | 4 | LOC_Os06g30340 |
| Insertion | Chr7 | 7817833 | 7817836 | 4 | |
| Insertion | Chr8 | 10714504 | 10714505 | 2 | |
| Insertion | Chr8 | 12235559 | 12235559 | 1 | |
| Insertion | Chr8 | 17372438 | 17372439 | 2 | |
| Insertion | Chr9 | 2067615 | 2067620 | 6 | |
| Insertion | Chr9 | 3717194 | 3717195 | 2 |
No Inversion
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 2304130 | Chr3 | 18691207 | 2 |
| Translocation | Chr3 | 8412205 | Chr1 | 17229629 | LOC_Os03g15370 |
| Translocation | Chr6 | 21879775 | Chr1 | 27145795 | LOC_Os01g47490 |
| Translocation | Chr6 | 21879779 | Chr1 | 27146427 | LOC_Os01g47490 |
| Translocation | Chr11 | 24623144 | Chr8 | 9667645 | LOC_Os08g15880 |
| Translocation | Chr12 | 26149268 | Chr4 | 16073648 | |
| Translocation | Chr12 | 27052764 | Chr4 | 11544366 | LOC_Os12g43590 |