Search Results
| Mutant Information |
|---|
| Mutant Name | FN3866-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3866-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 26
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 5739864 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os01g10720 |
| SBS | Chr1 | 15914289 | A-G | HET | ||
| SBS | Chr2 | 1149892 | G-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os02g02930 |
| SBS | Chr2 | 4134925 | C-T | Homo | ||
| SBS | Chr2 | 11321521 | C-G | HET | ||
| SBS | Chr2 | 31132809 | A-T | Homo | ||
| SBS | Chr3 | 4245486 | G-A | HET | ||
| SBS | Chr3 | 12122393 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os03g21230 |
| SBS | Chr3 | 14441900 | C-T | Homo | ||
| SBS | Chr3 | 14441902 | T-A | Homo | ||
| SBS | Chr4 | 16252937 | C-G | HET | ||
| SBS | Chr4 | 22915512 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os04g38570 |
| SBS | Chr4 | 23624265 | G-T | HET | ||
| SBS | Chr4 | 25163839 | A-C | HET | ||
| SBS | Chr5 | 1307094 | C-G | Homo | ||
| SBS | Chr5 | 11625697 | T-A | Homo | ||
| SBS | Chr5 | 17498884 | G-A | HET | ||
| SBS | Chr5 | 28415488 | G-A | HET | ||
| SBS | Chr5 | 29164521 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os05g50850 |
| SBS | Chr7 | 10635928 | C-A | HET | ||
| SBS | Chr7 | 25331412 | C-T | Homo | ||
| SBS | Chr7 | 25331415 | C-T | Homo | ||
| SBS | Chr7 | 25355968 | A-G | Homo | ||
| SBS | Chr10 | 13235612 | T-C | HET | ||
| SBS | Chr11 | 26312148 | G-A | HET | ||
| SBS | Chr12 | 5709443 | G-A | Homo |
Deletions: 6
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 18079311 | 18079334 | 23 | LOC_Os09g29730 |
| Deletion | Chr9 | 19906600 | 19906605 | 5 | |
| Deletion | Chr8 | 20248694 | 20248695 | 1 | |
| Deletion | Chr4 | 21179046 | 21179063 | 17 | LOC_Os04g34880 |
| Deletion | Chr11 | 25740024 | 25740027 | 3 | |
| Deletion | Chr5 | 26784234 | 26784237 | 3 |
Insertions: 8
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr3 | 27067432 | 27067433 | 2 | |
| Insertion | Chr6 | 12048681 | 12048682 | 2 | |
| Insertion | Chr9 | 21778486 | 21778487 | 2 | |
| Insertion | Chr10 | 8836125 | 8836126 | 2 | |
| Insertion | Chr1 | 6477024 | 6477025 | 2 | |
| Insertion | Chr1 | 29173556 | 29173559 | 4 | |
| Insertion | Chr5 | 29939605 | 29939611 | 7 | |
| Insertion | Chr10 | 14811315 | 14811315 | 1 | LOC_Os10g28460 |
Inversions: 5
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr9 | 14376642 | 14377175 | |
| Inversion | Chr4 | 21954327 | 22258862 | LOC_Os04g36890 |
| Inversion | Chr4 | 21954329 | 22257529 | |
| Inversion | Chr2 | 22966894 | 22967081 | |
| Inversion | Chr11 | 24529734 | 25339764 | LOC_Os11g42090 |
Translocations: 8
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 13393120 | Chr10 | 4100396 | LOC_Os11g23234 |
| Translocation | Chr12 | 13547459 | Chr11 | 22973797 | LOC_Os11g38710 |
| Translocation | Chr11 | 16806711 | Chr4 | 13188940 | LOC_Os04g23190 |
| Translocation | Chr12 | 18641677 | Chr11 | 14248297 | LOC_Os11g25020 |
| Translocation | Chr8 | 22301720 | Chr6 | 13618918 | |
| Translocation | Chr4 | 25205778 | Chr3 | 16530936 | |
| Translocation | Chr8 | 27778476 | Chr6 | 1072418 | LOC_Os08g44110 |
| Translocation | Chr11 | 28270561 | Chr9 | 13425285 | LOC_Os09g22190 |