Search Nipponbare
| Mutant Information |
|---|
| Mutant Name | FN3867-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3867-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 32
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 10846863 | A-T | Homo | ||
| SBS | Chr1 | 13484601 | T-A | HET | ||
| SBS | Chr1 | 16138099 | A-G | HET | ||
| SBS | Chr1 | 5097971 | C-A | HET | ||
| SBS | Chr10 | 14353135 | A-T | HET | ||
| SBS | Chr10 | 1983386 | A-T | HET | ||
| SBS | Chr10 | 1983387 | A-T | HET | ||
| SBS | Chr10 | 20587680 | C-T | HET | ||
| SBS | Chr11 | 10086306 | G-A | HET | ||
| SBS | Chr2 | 26351063 | G-A | HET | ||
| SBS | Chr2 | 68919 | A-G | HET | ||
| SBS | Chr3 | 4467224 | C-T | Homo | ||
| SBS | Chr3 | 5155315 | G-A | HET | ||
| SBS | Chr4 | 4618039 | T-C | HET | ||
| SBS | Chr4 | 7764160 | C-T | HET | ||
| SBS | Chr4 | 8803593 | A-T | HET | ||
| SBS | Chr5 | 17583522 | A-G | HET | ||
| SBS | Chr5 | 21823940 | G-C | HET | ||
| SBS | Chr5 | 23003882 | G-A | HET | ||
| SBS | Chr6 | 14035804 | G-A | HET | ||
| SBS | Chr6 | 23808056 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g40020 |
| SBS | Chr6 | 23808057 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g40020 |
| SBS | Chr6 | 25752239 | G-A | HET | ||
| SBS | Chr6 | 26050810 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os06g43330 |
| SBS | Chr7 | 16536956 | A-T | HET | ||
| SBS | Chr7 | 21243852 | G-A | HET | ||
| SBS | Chr7 | 25357029 | A-G | HET | ||
| SBS | Chr7 | 26864242 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os07g45020 |
| SBS | Chr9 | 18623483 | T-C | Homo | ||
| SBS | Chr9 | 18623490 | C-G | Homo | ||
| SBS | Chr9 | 18625592 | T-C | Homo | ||
| SBS | Chr9 | 18625718 | T-C | Homo |
Deletions: 10
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr4 | 2821675 | 2821680 | 5 | LOC_Os04g05570 |
| Deletion | Chr5 | 5107205 | 5107213 | 8 | |
| Deletion | Chr5 | 5218065 | 5218066 | 1 | LOC_Os05g09340 |
| Deletion | Chr1 | 7310904 | 7310905 | 1 | |
| Deletion | Chr8 | 9123440 | 9123454 | 14 | |
| Deletion | Chr9 | 11341038 | 11341039 | 1 | LOC_Os09g18500 |
| Deletion | Chr12 | 13357344 | 13357363 | 19 | |
| Deletion | Chr12 | 13915493 | 13915494 | 1 | LOC_Os12g24390 |
| Deletion | Chr10 | 14374635 | 14374641 | 6 | |
| Deletion | Chr11 | 19297001 | 19320000 | 22999 | 4 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 11541565 | 11541566 | 2 | |
| Insertion | Chr12 | 12299657 | 12299664 | 8 |
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr10 | 2695304 | 2695426 | |
| Inversion | Chr12 | 13921780 | 13935702 | |
| Inversion | Chr1 | 20105465 | 20106915 | |
| Inversion | Chr4 | 25152054 | 25152569 | LOC_Os04g42500 |
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 5756262 | Chr10 | 2438965 | LOC_Os10g05000 |
| Translocation | Chr12 | 5756489 | Chr10 | 2438967 | 2 |
| Translocation | Chr9 | 7836052 | Chr5 | 10185767 | |
| Translocation | Chr11 | 19312928 | Chr3 | 23978689 | |
| Translocation | Chr11 | 19313570 | Chr3 | 23978690 | |
| Translocation | Chr12 | 20641833 | Chr4 | 32929275 | LOC_Os12g34100 |
| Translocation | Chr11 | 22899618 | Chr8 | 18139720 |