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Mutant Information

Mutant Name	FN3868-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3868-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 18

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	968358	G-T	HET
SBS	Chr10	11852717	C-T	Homo
SBS	Chr10	12405957	C-T	Homo
SBS	Chr10	20408963	T-C	Homo
SBS	Chr10	22249170	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os10g41390
SBS	Chr11	11373422	A-T	HET
SBS	Chr3	12002906	A-G	Homo
SBS	Chr3	15016297	T-C	Homo
SBS	Chr3	20155070	A-G	Homo
SBS	Chr3	25259605	T-A	Homo
SBS	Chr4	13597008	G-A	Homo
SBS	Chr5	13396837	T-C	HET
SBS	Chr5	370100	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g01620
SBS	Chr6	6697421	T-C	Homo
SBS	Chr9	12892885	T-C	HET
SBS	Chr9	1968060	A-C	Homo
SBS	Chr9	19937984	G-A	HET
SBS	Chr9	3983216	T-A	Homo

Deletions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	628234	628235	1	LOC_Os10g01984
Deletion	Chr2	2711735	2711736	1
Deletion	Chr10	5349205	5349739	534
Deletion	Chr4	6560908	6560913	5
Deletion	Chr6	6901200	6901209	9
Deletion	Chr4	8143895	8143916	21
Deletion	Chr7	9597295	9597333	38	LOC_Os07g16400
Deletion	Chr5	17268424	17268425	1	LOC_Os05g29840
Deletion	Chr1	18915877	18915879	2
Deletion	Chr1	21516001	21867000	350999	54
Deletion	Chr10	21940482	21940488	6
Deletion	Chr1	26213072	26213145	73
Deletion	Chr3	35661393	35661402	9	LOC_Os03g63074

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	895170	895171	2
Insertion	Chr11	25040564	25040565	2
Insertion	Chr2	23462455	23462455	1
Insertion	Chr6	13536426	13536427	2
Insertion	Chr6	29086294	29086294	1	LOC_Os06g48070
Insertion	Chr6	29396167	29396168	2
Insertion	Chr8	12244980	12244980	1

No Inversion

Translocations: 13

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	3260895	Chr1	23512587
Translocation	Chr2	4657003	Chr1	1044289
Translocation	Chr6	6822675	Chr4	27350908
Translocation	Chr12	10157082	Chr1	3090994
Translocation	Chr8	14223161	Chr6	18930399	LOC_Os08g23490
Translocation	Chr9	14310373	Chr1	21507603	2
Translocation	Chr11	15950035	Chr1	14847997
Translocation	Chr9	18370188	Chr8	2960408
Translocation	Chr12	19386962	Chr5	3099374	LOC_Os12g32140
Translocation	Chr11	21139127	Chr8	18706912	LOC_Os11g35970
Translocation	Chr9	21954632	Chr6	6426492	LOC_Os09g38104
Translocation	Chr8	23386247	Chr7	24488804
Translocation	Chr12	25370427	Chr8	15270537