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| Mutant Information |
|---|
| Mutant Name | FN3872-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3872-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 23
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 13850172 | C-A | HET | ||
| SBS | Chr11 | 18836550 | C-T | Homo | ||
| SBS | Chr11 | 20978104 | G-A | HET | ||
| SBS | Chr12 | 15542736 | A-G | Homo | ||
| SBS | Chr12 | 2404730 | G-A | HET | ||
| SBS | Chr2 | 2970563 | C-T | HET | ||
| SBS | Chr2 | 32028763 | G-A | HET | ||
| SBS | Chr3 | 19472971 | G-A | HET | ||
| SBS | Chr3 | 24276363 | C-A | HET | ||
| SBS | Chr3 | 33272921 | C-A | Homo | ||
| SBS | Chr3 | 5237776 | C-T | HET | ||
| SBS | Chr3 | 6314468 | C-T | HET | ||
| SBS | Chr4 | 3346518 | G-A | HET | ||
| SBS | Chr4 | 6669453 | T-A | Homo | ||
| SBS | Chr4 | 6669454 | T-A | Homo | ||
| SBS | Chr5 | 11783124 | G-A | HET | ||
| SBS | Chr6 | 13263422 | C-T | HET | ||
| SBS | Chr7 | 17592461 | G-A | HET | ||
| SBS | Chr7 | 28599400 | T-A | Homo | ||
| SBS | Chr8 | 16079168 | C-T | Homo | STOP_GAINED | LOC_Os08g26380 |
| SBS | Chr9 | 18359676 | C-T | HET | ||
| SBS | Chr9 | 6945326 | C-T | HET | ||
| SBS | Chr9 | 9088194 | G-A | HET |
Deletions: 11
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 4005487 | 4005488 | 1 | |
| Deletion | Chr9 | 9568001 | 9587000 | 18999 | 4 |
| Deletion | Chr4 | 11284451 | 11284462 | 11 | |
| Deletion | Chr1 | 11618830 | 11618833 | 3 | |
| Deletion | Chr10 | 13024484 | 13024487 | 3 | |
| Deletion | Chr1 | 15306803 | 15306804 | 1 | |
| Deletion | Chr12 | 19176406 | 19176410 | 4 | |
| Deletion | Chr9 | 20743251 | 20743253 | 2 | LOC_Os09g36010 |
| Deletion | Chr7 | 21262464 | 21262465 | 1 | |
| Deletion | Chr11 | 26146671 | 26146673 | 2 | |
| Deletion | Chr1 | 43172813 | 43172819 | 6 |
Insertions: 5
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr12 | 8527296 | 8595936 | LOC_Os12g15060 |
| Inversion | Chr12 | 8527305 | 8595937 | LOC_Os12g15060 |
| Inversion | Chr3 | 19395330 | 19453462 | |
| Inversion | Chr2 | 31580688 | 32397248 |
Translocations: 9
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 6826921 | Chr9 | 2081447 | |
| Translocation | Chr7 | 11638722 | Chr4 | 9587646 | |
| Translocation | Chr9 | 15008571 | Chr1 | 12925592 | |
| Translocation | Chr12 | 15876581 | Chr2 | 16818007 | |
| Translocation | Chr12 | 17220116 | Chr8 | 4874715 | 2 |
| Translocation | Chr9 | 19906144 | Chr6 | 27422494 | LOC_Os06g45360 |
| Translocation | Chr9 | 19906148 | Chr6 | 27422923 | LOC_Os06g45360 |
| Translocation | Chr11 | 23278362 | Chr5 | 27174266 | |
| Translocation | Chr2 | 31147908 | Chr1 | 39046651 |