Search Nipponbare
| Mutant Information |
|---|
| Mutant Name | FN3875-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3875-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 20
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 29048876 | G-A | Homo | ||
| SBS | Chr1 | 9518182 | T-C | Homo | ||
| SBS | Chr10 | 11419782 | T-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os10g22110 |
| SBS | Chr10 | 14148939 | T-A | HET | ||
| SBS | Chr11 | 13657788 | G-C | HET | ||
| SBS | Chr2 | 5602164 | A-T | Homo | ||
| SBS | Chr4 | 17694464 | G-A | HET | ||
| SBS | Chr4 | 34951424 | A-C | HET | STOP_LOST | LOC_Os04g58760 |
| SBS | Chr5 | 12746595 | G-T | Homo | ||
| SBS | Chr6 | 16488812 | G-A | HET | ||
| SBS | Chr6 | 3969859 | T-A | Homo | ||
| SBS | Chr6 | 9811369 | G-A | HET | ||
| SBS | Chr7 | 12950651 | C-T | HET | ||
| SBS | Chr7 | 12950652 | A-T | HET | ||
| SBS | Chr7 | 18054232 | T-A | HET | ||
| SBS | Chr8 | 16895868 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os08g27720 |
| SBS | Chr8 | 25240079 | C-G | Homo | ||
| SBS | Chr9 | 18803358 | A-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os09g31270 |
| SBS | Chr9 | 3510568 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os09g07170 |
| SBS | Chr9 | 9180694 | C-T | HET |
Deletions: 17
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 921496 | 921515 | 19 | |
| Deletion | Chr2 | 2063893 | 2063895 | 2 | |
| Deletion | Chr5 | 4051939 | 4051941 | 2 | |
| Deletion | Chr3 | 10167802 | 10167817 | 15 | |
| Deletion | Chr4 | 10985691 | 10985696 | 5 | |
| Deletion | Chr8 | 13845445 | 13845449 | 4 | |
| Deletion | Chr3 | 16159608 | 16159617 | 9 | |
| Deletion | Chr5 | 17663650 | 17663665 | 15 | |
| Deletion | Chr5 | 17865352 | 17865353 | 1 | |
| Deletion | Chr5 | 19198568 | 19198574 | 6 | |
| Deletion | Chr10 | 21853323 | 21853326 | 3 | |
| Deletion | Chr3 | 23512894 | 23512899 | 5 | |
| Deletion | Chr5 | 24912411 | 24912415 | 4 | |
| Deletion | Chr6 | 29800001 | 29881000 | 80999 | 15 |
| Deletion | Chr1 | 30374096 | 30374107 | 11 | LOC_Os01g52790 |
| Deletion | Chr3 | 34970775 | 34970795 | 20 | |
| Deletion | Chr1 | 39559963 | 39559970 | 7 |
Insertions: 1
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr7 | 2171080 | 2171080 | 1 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr7 | 29508629 | 29623382 | 2 |
| Inversion | Chr7 | 29508630 | 29623386 | 2 |
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 5662338 | Chr1 | 24855432 | LOC_Os08g09790 |
| Translocation | Chr9 | 8143999 | Chr1 | 5142462 | |
| Translocation | Chr3 | 15238103 | Chr2 | 3401780 | |
| Translocation | Chr7 | 22813715 | Chr1 | 293069 | LOC_Os01g01580 |