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| Mutant Information |
|---|
| Mutant Name | FN3877-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3877-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 27
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 20069852 | T-A | HET | ||
| SBS | Chr1 | 41666755 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os01g71910 |
| SBS | Chr1 | 5632700 | G-A | HET | ||
| SBS | Chr1 | 7519916 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g13490 |
| SBS | Chr10 | 18926800 | G-T | HET | ||
| SBS | Chr10 | 2794733 | C-A | HET | ||
| SBS | Chr10 | 7602001 | C-T | HET | ||
| SBS | Chr11 | 10507392 | A-G | HET | ||
| SBS | Chr11 | 15692301 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os11g27264 |
| SBS | Chr12 | 22164719 | A-G | HET | ||
| SBS | Chr2 | 29654366 | T-C | Homo | ||
| SBS | Chr2 | 29654727 | G-T | Homo | ||
| SBS | Chr3 | 32356305 | T-A | HET | ||
| SBS | Chr3 | 32356306 | C-A | HET | ||
| SBS | Chr3 | 34289001 | C-T | HET | ||
| SBS | Chr3 | 34289008 | A-G | HET | ||
| SBS | Chr4 | 24288992 | C-G | Homo | ||
| SBS | Chr4 | 9626315 | G-A | Homo | ||
| SBS | Chr5 | 12112183 | G-C | HET | ||
| SBS | Chr5 | 7446645 | T-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os05g13420 |
| SBS | Chr6 | 15591776 | C-T | HET | ||
| SBS | Chr7 | 1272749 | T-A | HET | ||
| SBS | Chr7 | 12830061 | C-A | HET | ||
| SBS | Chr8 | 22496877 | G-T | Homo | ||
| SBS | Chr8 | 5354360 | G-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os08g09230 |
| SBS | Chr9 | 2151310 | C-T | Homo | ||
| SBS | Chr9 | 8253965 | G-A | HET |
Deletions: 8
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr11 | 1318241 | 1318249 | 8 | LOC_Os11g03440 |
| Deletion | Chr11 | 1406510 | 1406519 | 9 | LOC_Os11g03620 |
| Deletion | Chr3 | 4761499 | 4761502 | 3 | |
| Deletion | Chr1 | 7835878 | 7835906 | 28 | |
| Deletion | Chr1 | 10745054 | 10745061 | 7 | |
| Deletion | Chr12 | 14085357 | 14085360 | 3 | |
| Deletion | Chr2 | 20553739 | 20553748 | 9 | |
| Deletion | Chr1 | 35051297 | 35051309 | 12 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 24001907 | 24001908 | 2 | |
| Insertion | Chr5 | 14966180 | 14966181 | 2 | |
| Insertion | Chr5 | 28921371 | 28921376 | 6 | |
| Insertion | Chr7 | 4450627 | 4450627 | 1 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr11 | 26750805 | 27152347 | LOC_Os11g44860 |
| Inversion | Chr2 | 34565708 | 34742304 | LOC_Os02g56460 |
Translocations: 13
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr6 | 1160814 | Chr3 | 31094207 | |
| Translocation | Chr6 | 1160818 | Chr3 | 31092790 | |
| Translocation | Chr5 | 2777013 | Chr4 | 3631573 | |
| Translocation | Chr10 | 3623648 | Chr2 | 21538568 | |
| Translocation | Chr5 | 5767626 | Chr1 | 6544940 | |
| Translocation | Chr8 | 8178750 | Chr3 | 28268378 | |
| Translocation | Chr10 | 11709806 | Chr2 | 18067106 | LOC_Os10g22570 |
| Translocation | Chr12 | 11750713 | Chr9 | 4217496 | |
| Translocation | Chr10 | 12733661 | Chr8 | 9303447 | LOC_Os08g15300 |
| Translocation | Chr11 | 14148597 | Chr1 | 2542711 | LOC_Os01g05380 |
| Translocation | Chr2 | 18767863 | Chr1 | 3394966 | |
| Translocation | Chr12 | 19158347 | Chr1 | 12633030 | LOC_Os12g31840 |
| Translocation | Chr11 | 23151876 | Chr2 | 25520598 | 2 |