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| Mutant Information |
|---|
| Mutant Name | FN3881-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3881-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 24
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 24432096 | T-C | Homo | ||
| SBS | Chr1 | 27645068 | C-T | HET | ||
| SBS | Chr10 | 16647315 | T-A | HET | ||
| SBS | Chr11 | 18303038 | C-T | HET | ||
| SBS | Chr11 | 18527822 | A-C | HET | NON_SYNONYMOUS_CODING | LOC_Os11g31680 |
| SBS | Chr2 | 27757218 | T-C | Homo | ||
| SBS | Chr3 | 13375021 | G-C | HET | ||
| SBS | Chr3 | 19551647 | T-C | HET | ||
| SBS | Chr3 | 34257135 | A-T | Homo | ||
| SBS | Chr3 | 5997651 | C-T | Homo | ||
| SBS | Chr4 | 2481172 | G-T | HET | ||
| SBS | Chr4 | 35029246 | G-A | Homo | ||
| SBS | Chr5 | 22621818 | G-A | Homo | ||
| SBS | Chr5 | 29098793 | C-A | Homo | ||
| SBS | Chr5 | 29156594 | T-C | Homo | ||
| SBS | Chr6 | 27914865 | G-T | Homo | ||
| SBS | Chr6 | 4414832 | T-A | HET | ||
| SBS | Chr7 | 27557505 | G-A | HET | ||
| SBS | Chr7 | 27557506 | G-A | HET | ||
| SBS | Chr7 | 6680282 | T-A | Homo | ||
| SBS | Chr7 | 6680283 | G-A | Homo | ||
| SBS | Chr8 | 28178879 | T-C | HET | ||
| SBS | Chr8 | 9472621 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os08g15580 |
| SBS | Chr9 | 15571299 | G-T | Homo |
Deletions: 9
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr3 | 51357 | 51358 | 1 | LOC_Os03g01070 |
| Deletion | Chr7 | 6955001 | 7008000 | 52999 | 3 |
| Deletion | Chr10 | 8292135 | 8292142 | 7 | |
| Deletion | Chr12 | 8845714 | 8845716 | 2 | |
| Deletion | Chr9 | 14829327 | 14829328 | 1 | LOC_Os09g24840 |
| Deletion | Chr5 | 17266832 | 17266833 | 1 | |
| Deletion | Chr3 | 21035909 | 21035919 | 10 | |
| Deletion | Chr1 | 27312963 | 27312966 | 3 | |
| Deletion | Chr3 | 28461453 | 28461454 | 1 | LOC_Os03g49910 |
Insertions: 7
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 5763183 | 5763188 | 6 | |
| Insertion | Chr10 | 4529057 | 4529102 | 46 | |
| Insertion | Chr12 | 6994745 | 6994745 | 1 | |
| Insertion | Chr8 | 10382166 | 10382170 | 5 | |
| Insertion | Chr8 | 15286949 | 15286991 | 43 | |
| Insertion | Chr9 | 13061771 | 13061772 | 2 | |
| Insertion | Chr9 | 223262 | 223266 | 5 | LOC_Os09g01260 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr5 | 5620008 | 5620386 | |
| Inversion | Chr1 | 36498881 | 37110086 |
Translocations: 11
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr4 | 398685 | Chr1 | 36498884 | LOC_Os04g01590 |
| Translocation | Chr4 | 399254 | Chr1 | 37110149 | LOC_Os04g01590 |
| Translocation | Chr7 | 986546 | Chr4 | 20112251 | |
| Translocation | Chr7 | 6956094 | Chr5 | 23063265 | LOC_Os07g12330 |
| Translocation | Chr10 | 8060729 | Chr5 | 16540626 | 2 |
| Translocation | Chr9 | 9428949 | Chr6 | 3310573 | |
| Translocation | Chr9 | 9431153 | Chr6 | 3310571 | LOC_Os09g15400 |
| Translocation | Chr10 | 12990347 | Chr4 | 6717235 | |
| Translocation | Chr8 | 15185467 | Chr6 | 11230561 | LOC_Os06g19670 |
| Translocation | Chr12 | 18614227 | Chr1 | 1103140 | LOC_Os12g30990 |
| Translocation | Chr7 | 24518510 | Chr3 | 11232144 | LOC_Os07g40986 |