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| Mutant Information |
|---|
| Mutant Name | FN3883-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3883-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 30
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 26418162 | G-T | Homo | ||
| SBS | Chr1 | 3761585 | C-A | HET | ||
| SBS | Chr1 | 5667277 | C-A | HET | ||
| SBS | Chr1 | 5667278 | T-A | HET | ||
| SBS | Chr10 | 1475522 | T-A | HET | ||
| SBS | Chr10 | 1475525 | G-A | HET | ||
| SBS | Chr10 | 16059192 | A-C | HET | ||
| SBS | Chr10 | 208038 | T-G | HET | ||
| SBS | Chr12 | 8580048 | C-T | Homo | ||
| SBS | Chr2 | 1721901 | T-A | HET | ||
| SBS | Chr2 | 17747822 | T-A | HET | ||
| SBS | Chr2 | 18582307 | A-G | HET | ||
| SBS | Chr2 | 20212566 | A-G | HET | ||
| SBS | Chr2 | 31397539 | G-T | HET | ||
| SBS | Chr2 | 3586649 | G-A | HET | ||
| SBS | Chr2 | 4757189 | T-G | Homo | ||
| SBS | Chr3 | 14568168 | G-A | Homo | ||
| SBS | Chr3 | 17954274 | G-T | Homo | ||
| SBS | Chr3 | 26056324 | G-A | HET | ||
| SBS | Chr3 | 6327819 | C-T | HET | ||
| SBS | Chr4 | 61598 | G-C | Homo | ||
| SBS | Chr4 | 8958989 | T-C | HET | ||
| SBS | Chr5 | 6773315 | C-G | HET | ||
| SBS | Chr6 | 20718241 | G-A | Homo | ||
| SBS | Chr6 | 24377401 | G-A | Homo | ||
| SBS | Chr7 | 25318296 | G-T | Homo | ||
| SBS | Chr7 | 8430193 | A-G | HET | ||
| SBS | Chr8 | 4366044 | T-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os08g07800 |
| SBS | Chr9 | 2208603 | T-C | Homo | ||
| SBS | Chr9 | 8377939 | G-C | HET |
Deletions: 10
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr6 | 1233449 | 1233450 | 1 | |
| Deletion | Chr3 | 13109789 | 13109793 | 4 | |
| Deletion | Chr11 | 14592669 | 14592670 | 1 | |
| Deletion | Chr1 | 16123731 | 16123738 | 7 | |
| Deletion | Chr5 | 16682411 | 16682426 | 15 | |
| Deletion | Chr10 | 16825488 | 16825500 | 12 | |
| Deletion | Chr2 | 18334886 | 18334910 | 24 | |
| Deletion | Chr5 | 19322501 | 19322502 | 1 | |
| Deletion | Chr6 | 20724094 | 20724097 | 3 | LOC_Os06g35530 |
| Deletion | Chr11 | 28008323 | 28008329 | 6 | LOC_Os11g46250 |
Insertions: 7
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 25692687 | 25692687 | 1 | |
| Insertion | Chr3 | 2381404 | 2381405 | 2 | |
| Insertion | Chr3 | 8317499 | 8317499 | 1 | |
| Insertion | Chr4 | 5982180 | 5982180 | 1 | |
| Insertion | Chr5 | 12214445 | 12214445 | 1 | |
| Insertion | Chr5 | 169904 | 169906 | 3 | |
| Insertion | Chr7 | 20864020 | 20864020 | 1 | LOC_Os07g34810 |
No Inversion
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 5331518 | Chr2 | 30103023 | |
| Translocation | Chr9 | 5579391 | Chr1 | 949477 | 2 |
| Translocation | Chr2 | 17095167 | Chr1 | 43075238 | LOC_Os01g74350 |
| Translocation | Chr2 | 17096668 | Chr1 | 43075243 | LOC_Os01g74350 |
| Translocation | Chr11 | 23031931 | Chr2 | 17885998 | LOC_Os02g30110 |
| Translocation | Chr8 | 24150225 | Chr6 | 23038830 |