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Mutant Information

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12640088	G-A	Homo
SBS	Chr1	13432934	A-T	Homo
SBS	Chr1	15377433	C-A	Homo
SBS	Chr1	23292218	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g41140
SBS	Chr1	34265895	G-A	HET
SBS	Chr1	36203491	C-T	HET
SBS	Chr1	36417518	G-A	HET
SBS	Chr10	3028995	T-C	Homo
SBS	Chr12	6787358	C-T	HET
SBS	Chr12	885166	C-T	HET
SBS	Chr2	19039074	A-T	HET	STOP_GAINED	LOC_Os02g32230
SBS	Chr2	8840587	A-G	Homo
SBS	Chr3	23242290	T-C	HET
SBS	Chr3	24666764	G-A	HET
SBS	Chr3	26188478	A-C	HET
SBS	Chr3	8573919	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g15570
SBS	Chr5	22103171	G-T	HET
SBS	Chr5	22829214	A-G	Homo
SBS	Chr5	29614589	C-T	HET
SBS	Chr5	69525	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g01040
SBS	Chr6	1147755	A-G	Homo
SBS	Chr6	27762771	G-T	HET
SBS	Chr7	5140290	T-A	Homo
SBS	Chr7	5140291	T-A	Homo
SBS	Chr8	17163550	C-T	Homo
SBS	Chr9	16986618	A-G	Homo
SBS	Chr9	9842720	T-C	Homo

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	247569	247583	14
Deletion	Chr11	423315	423330	15
Deletion	Chr1	668156	668160	4	LOC_Os01g02230
Deletion	Chr6	1191284	1191297	13
Deletion	Chr4	1219970	1219973	3
Deletion	Chr10	2078301	2078302	1
Deletion	Chr9	4508778	4508780	2
Deletion	Chr2	6422058	6422061	3
Deletion	Chr3	6987739	6987740	1
Deletion	Chr7	9992583	9992588	5
Deletion	Chr1	10454974	10454985	11
Deletion	Chr4	10977870	10977873	3
Deletion	Chr3	11894728	11894729	1	LOC_Os03g20970
Deletion	Chr5	11896510	11896512	2
Deletion	Chr4	11939375	11939388	13
Deletion	Chr5	12131073	12131074	1
Deletion	Chr4	12781542	12781545	3
Deletion	Chr2	15334931	15334932	1
Deletion	Chr4	25514677	25514692	15
Deletion	Chr11	28699148	28699149	1
Deletion	Chr2	33970881	33970885	4

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	10480745	10480745	1
Insertion	Chr11	22549521	22549746	226
Insertion	Chr3	17537746	17537803	58

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	5768893	5769163
Inversion	Chr5	12872860	13601677
Inversion	Chr7	14703455	15133295	LOC_Os07g25650
Inversion	Chr7	15133303	15145552	LOC_Os07g26350
Inversion	Chr8	21898140	21898448

Translocations: 9

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	3612989	Chr7	26946719	LOC_Os11g07200
Translocation	Chr12	7608871	Chr2	13477787	LOC_Os02g22610
Translocation	Chr10	7674106	Chr3	25685778
Translocation	Chr9	12085432	Chr6	25881774
Translocation	Chr12	18355317	Chr11	1476168	2
Translocation	Chr11	19390373	Chr2	23245125
Translocation	Chr7	21711356	Chr5	13540457	2
Translocation	Chr6	22658470	Chr1	299895	LOC_Os06g38294
Translocation	Chr11	24374256	Chr8	17449731

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