Search Nipponbare
| Mutant Information |
|---|
| Mutant Name | FN3886-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3886-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 26
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 21969110 | T-C | HET | ||
| SBS | Chr1 | 23859921 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os01g42080 |
| SBS | Chr10 | 4490047 | G-C | HET | ||
| SBS | Chr11 | 17244195 | T-A | HET | ||
| SBS | Chr11 | 195124 | C-T | Homo | ||
| SBS | Chr11 | 20138487 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os11g34360 |
| SBS | Chr11 | 23908975 | T-C | Homo | ||
| SBS | Chr12 | 17574693 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os12g29520 |
| SBS | Chr12 | 17574705 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os12g29520 |
| SBS | Chr2 | 10208408 | T-C | Homo | ||
| SBS | Chr3 | 16178913 | T-C | HET | ||
| SBS | Chr3 | 25626413 | A-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os03g45390 |
| SBS | Chr3 | 29998917 | T-A | Homo | ||
| SBS | Chr3 | 3443136 | C-A | HET | ||
| SBS | Chr4 | 12120568 | G-A | HET | ||
| SBS | Chr4 | 20648675 | G-T | HET | ||
| SBS | Chr4 | 27736642 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os04g46790 |
| SBS | Chr4 | 8191162 | C-G | HET | ||
| SBS | Chr5 | 24041176 | A-G | HET | ||
| SBS | Chr5 | 4650681 | C-T | Homo | ||
| SBS | Chr5 | 9217832 | G-T | HET | ||
| SBS | Chr6 | 26700200 | T-A | HET | ||
| SBS | Chr6 | 7596998 | T-C | HET | ||
| SBS | Chr7 | 25471491 | T-G | HET | ||
| SBS | Chr7 | 28002985 | T-C | Homo | ||
| SBS | Chr7 | 6686748 | G-T | Homo |
Deletions: 10
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr11 | 951896 | 951901 | 5 | |
| Deletion | Chr4 | 7864130 | 7864138 | 8 | |
| Deletion | Chr8 | 9944781 | 9944782 | 1 | LOC_Os08g16290 |
| Deletion | Chr6 | 14238020 | 14238021 | 1 | |
| Deletion | Chr1 | 16056936 | 16056951 | 15 | |
| Deletion | Chr11 | 18662337 | 18662353 | 16 | |
| Deletion | Chr6 | 21549587 | 21549596 | 9 | |
| Deletion | Chr6 | 25799539 | 25799540 | 1 | |
| Deletion | Chr12 | 27414990 | 27415311 | 321 | |
| Deletion | Chr1 | 36175064 | 36175066 | 2 |
Insertions: 7
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 24264286 | 24264287 | 2 | |
| Insertion | Chr10 | 2805544 | 2805544 | 1 | |
| Insertion | Chr11 | 14478809 | 14478809 | 1 | |
| Insertion | Chr11 | 23450674 | 23450674 | 1 | |
| Insertion | Chr3 | 18861924 | 18861927 | 4 | |
| Insertion | Chr4 | 10817734 | 10817734 | 1 | |
| Insertion | Chr5 | 11172186 | 11172187 | 2 | LOC_Os05g19240 |
Inversions: 8
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr4 | 4430512 | 4430975 | |
| Inversion | Chr6 | 5168188 | 5358233 | LOC_Os06g10420 |
| Inversion | Chr6 | 5168198 | 5358245 | LOC_Os06g10420 |
| Inversion | Chr8 | 9785892 | 9786275 | LOC_Os08g16050 |
| Inversion | Chr3 | 15645400 | 16183599 | LOC_Os03g28140 |
| Inversion | Chr3 | 15645432 | 16184940 | LOC_Os03g28140 |
| Inversion | Chr3 | 18239391 | 18438060 | LOC_Os03g31880 |
| Inversion | Chr3 | 18239399 | 18438064 | LOC_Os03g31880 |
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr7 | 6705167 | Chr5 | 21570605 | LOC_Os05g36930 |
| Translocation | Chr7 | 6705708 | Chr5 | 21570606 | LOC_Os05g36930 |
| Translocation | Chr8 | 9306289 | Chr3 | 19340973 | 2 |
| Translocation | Chr11 | 20097362 | Chr1 | 23676403 | |
| Translocation | Chr4 | 25757008 | Chr3 | 11224776 | LOC_Os03g19950 |
| Translocation | Chr11 | 29009959 | Chr3 | 31101977 |