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Mutant Information

Mutant NameFN3886-S [Download]
GenerationM2
Genus SpeciesOryza Sativa
CultivarKitaake
Alignment File (BAM File)Download FN3886-S Alignment File
Seed AvailabilityYes [Order Seeds]
Mapping
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Variant Information

Single base substitutions: 26
Variant Type Chromosome Position Change Genotype Effect Gene Affected
SBSChr121969110T-CHET
SBSChr123859921A-GHETNON_SYNONYMOUS_CODINGLOC_Os01g42080
SBSChr104490047G-CHET
SBSChr1117244195T-AHET
SBSChr11195124C-THomo
SBSChr1120138487G-AHomoNON_SYNONYMOUS_CODINGLOC_Os11g34360
SBSChr1123908975T-CHomo
SBSChr1217574693T-CHETNON_SYNONYMOUS_CODINGLOC_Os12g29520
SBSChr1217574705G-AHETNON_SYNONYMOUS_CODINGLOC_Os12g29520
SBSChr210208408T-CHomo
SBSChr316178913T-CHET
SBSChr325626413A-GHomoNON_SYNONYMOUS_CODINGLOC_Os03g45390
SBSChr329998917T-AHomo
SBSChr33443136C-AHET
SBSChr412120568G-AHET
SBSChr420648675G-THET
SBSChr427736642G-AHomoNON_SYNONYMOUS_CODINGLOC_Os04g46790
SBSChr48191162C-GHET
SBSChr524041176A-GHET
SBSChr54650681C-THomo
SBSChr59217832G-THET
SBSChr626700200T-AHET
SBSChr67596998T-CHET
SBSChr725471491T-GHET
SBSChr728002985T-CHomo
SBSChr76686748G-THomo

Deletions: 10
Variant Type Chromosome Start End Size (bp) Number of Genes
DeletionChr119518969519015
DeletionChr4786413078641388
DeletionChr8994478199447821LOC_Os08g16290
DeletionChr614238020142380211
DeletionChr1160569361605695115
DeletionChr11186623371866235316
DeletionChr621549587215495969
DeletionChr625799539257995401
DeletionChr122741499027415311321
DeletionChr136175064361750662

Insertions: 7
Variant Type Chromosome Start End Size (bp) Number of Genes
InsertionChr124264286242642872
InsertionChr10280554428055441
InsertionChr1114478809144788091
InsertionChr1123450674234506741
InsertionChr318861924188619274
InsertionChr410817734108177341
InsertionChr511172186111721872LOC_Os05g19240image

Inversions: 8
Variant Type Chromosome Position 1 Position 2 Number of Genes
InversionChr444305124430975
InversionChr651681885358233LOC_Os06g10420
InversionChr651681985358245LOC_Os06g10420
InversionChr897858929786275LOC_Os08g16050
InversionChr31564540016183599LOC_Os03g28140
InversionChr31564543216184940LOC_Os03g28140
InversionChr31823939118438060LOC_Os03g31880
InversionChr31823939918438064LOC_Os03g31880

Translocations: 6
Variant Type Chromosome Position 1 Chromosome Position 2 Number of Genes
TranslocationChr76705167Chr521570605LOC_Os05g36930
TranslocationChr76705708Chr521570606LOC_Os05g36930
TranslocationChr89306289Chr3193409732
TranslocationChr1120097362Chr123676403
TranslocationChr425757008Chr311224776LOC_Os03g19950
TranslocationChr1129009959Chr331101977