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| Mutant Information |
|---|
| Mutant Name | FN3887-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3887-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 37
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 28610361 | A-G | HET | ||
| SBS | Chr1 | 31765531 | T-C | HET | ||
| SBS | Chr10 | 20761356 | G-A | HET | ||
| SBS | Chr10 | 2207772 | C-T | HET | ||
| SBS | Chr11 | 11628440 | T-C | HET | ||
| SBS | Chr11 | 5612353 | C-T | Homo | ||
| SBS | Chr12 | 19221222 | C-A | Homo | ||
| SBS | Chr12 | 3995526 | A-G | Homo | ||
| SBS | Chr2 | 14289743 | G-A | HET | ||
| SBS | Chr2 | 16988069 | T-C | HET | ||
| SBS | Chr2 | 18331555 | G-A | HET | ||
| SBS | Chr2 | 9562351 | C-T | HET | ||
| SBS | Chr3 | 10177647 | T-C | HET | ||
| SBS | Chr3 | 17258232 | C-T | HET | ||
| SBS | Chr3 | 3611786 | C-A | Homo | ||
| SBS | Chr4 | 10706853 | G-T | HET | ||
| SBS | Chr4 | 12256918 | C-T | HET | ||
| SBS | Chr4 | 4579776 | G-A | Homo | ||
| SBS | Chr5 | 1974304 | A-G | HET | ||
| SBS | Chr5 | 24081913 | G-A | HET | ||
| SBS | Chr5 | 24496144 | T-A | HET | ||
| SBS | Chr5 | 24496145 | A-G | HET | ||
| SBS | Chr6 | 1107683 | G-A | HET | ||
| SBS | Chr6 | 17364138 | G-A | HET | ||
| SBS | Chr6 | 3145612 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os06g06720 |
| SBS | Chr7 | 11803125 | A-G | HET | ||
| SBS | Chr7 | 24650246 | C-T | HET | ||
| SBS | Chr7 | 25996390 | A-G | HET | ||
| SBS | Chr7 | 2842064 | T-A | HET | ||
| SBS | Chr7 | 7289157 | A-G | HET | ||
| SBS | Chr8 | 27974994 | G-T | HET | ||
| SBS | Chr8 | 3939685 | G-A | HET | ||
| SBS | Chr8 | 4126372 | T-A | HET | ||
| SBS | Chr8 | 8015298 | C-T | Homo | ||
| SBS | Chr9 | 12900137 | C-A | HET | ||
| SBS | Chr9 | 12900138 | C-T | HET | ||
| SBS | Chr9 | 21972476 | G-A | Homo |
Deletions: 16
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 1005424 | 1005425 | 1 | |
| Deletion | Chr6 | 1347630 | 1347659 | 29 | LOC_Os06g03500 |
| Deletion | Chr2 | 3741771 | 3741774 | 3 | |
| Deletion | Chr7 | 4548592 | 4548596 | 4 | |
| Deletion | Chr3 | 5740739 | 5740745 | 6 | LOC_Os03g11140 |
| Deletion | Chr8 | 6392299 | 6392300 | 1 | |
| Deletion | Chr6 | 11275073 | 11275075 | 2 | |
| Deletion | Chr2 | 12213564 | 12213566 | 2 | |
| Deletion | Chr5 | 14812328 | 14812333 | 5 | |
| Deletion | Chr11 | 15301877 | 15301895 | 18 | |
| Deletion | Chr7 | 15622638 | 15622639 | 1 | |
| Deletion | Chr5 | 24653223 | 24653224 | 1 | |
| Deletion | Chr5 | 25489090 | 25489091 | 1 | |
| Deletion | Chr2 | 25575192 | 25575194 | 2 | |
| Deletion | Chr8 | 26477329 | 26477333 | 4 | |
| Deletion | Chr2 | 27129001 | 27147000 | 17999 | 3 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr4 | 8368902 | 8368902 | 1 | |
| Insertion | Chr5 | 29163155 | 29163156 | 2 | |
| Insertion | Chr7 | 2769658 | 2769659 | 2 | |
| Insertion | Chr7 | 6492372 | 6492373 | 2 |
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr10 | 8764945 | 8765199 |
Translocations: 5
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr9 | 987054 | Chr2 | 19285131 | |
| Translocation | Chr4 | 12370197 | Chr2 | 1489449 | |
| Translocation | Chr6 | 25881774 | Chr2 | 8845522 | |
| Translocation | Chr11 | 26138987 | Chr6 | 15518055 | |
| Translocation | Chr12 | 26842381 | Chr5 | 25483009 | LOC_Os05g43830 |