Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 15

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13094073	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g23310
SBS	Chr10	7976099	G-A	Homo
SBS	Chr2	22854522	G-A	HET
SBS	Chr2	31221717	C-A	HET
SBS	Chr3	28111514	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g49380
SBS	Chr3	7246205	C-T	Homo
SBS	Chr4	12352659	G-A	HET
SBS	Chr4	22620622	T-A	Homo
SBS	Chr4	9437324	C-T	HET
SBS	Chr5	12343291	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g20980
SBS	Chr6	2901103	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os06g06270
SBS	Chr8	27081703	C-T	HET
SBS	Chr8	28118236	A-T	HET
SBS	Chr9	19913143	C-G	Homo
SBS	Chr9	22308252	G-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os09g38834

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	1052646	1052647	1
Deletion	Chr11	1218722	1218724	2
Deletion	Chr10	1265173	1265187	14
Deletion	Chr9	1577732	1577743	11
Deletion	Chr4	3191664	3191666	2
Deletion	Chr7	5295981	5295982	1
Deletion	Chr8	5617523	5617525	2
Deletion	Chr8	6382000	6382015	15
Deletion	Chr9	6995045	6995047	2
Deletion	Chr11	7389981	7389987	6
Deletion	Chr10	7396818	7396829	11
Deletion	Chr10	8461834	8461853	19
Deletion	Chr1	10424099	10424100	1
Deletion	Chr1	14482646	14482647	1
Deletion	Chr7	18598235	18598262	27	LOC_Os07g31390
Deletion	Chr7	19428222	19428227	5
Deletion	Chr3	19999072	19999076	4	LOC_Os03g36050
Deletion	Chr8	21210444	21210446	2
Deletion	Chr12	21935113	21935122	9
Deletion	Chr5	25438563	25438571	8
Deletion	Chr1	26289761	26289769	8
Deletion	Chr11	28607685	28607686	1
Deletion	Chr2	30682040	30682053	13
Deletion	Chr1	36367848	36367849	1

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr6	15176289	15176289	1
Insertion	Chr6	26597810	26597811	2
Insertion	Chr6	26597821	26597826	6

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	2064450	2492153
Inversion	Chr5	2066877	2492155

No Translocation

Main menu