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Mutant Information |
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Mutant Name | FN3888-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN3888-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 15
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
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SBS | Chr1 | 13094073 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g23310 |
SBS | Chr2 | 22854522 | G-A | HET | ||
SBS | Chr2 | 31221717 | C-A | HET | ||
SBS | Chr3 | 7246205 | C-T | Homo | ||
SBS | Chr3 | 28111514 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os03g49380 |
SBS | Chr4 | 9437324 | C-T | HET | ||
SBS | Chr4 | 12352659 | G-A | HET | ||
SBS | Chr4 | 22620622 | T-A | Homo | ||
SBS | Chr5 | 12343291 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os05g20980 |
SBS | Chr6 | 2901103 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os06g06270 |
SBS | Chr8 | 27081703 | C-T | HET | ||
SBS | Chr8 | 28118236 | A-T | HET | ||
SBS | Chr9 | 19913143 | C-G | Homo | ||
SBS | Chr9 | 22308252 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os09g38834 |
SBS | Chr10 | 7976099 | G-A | Homo |
Deletions: 24
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr10 | 1052646 | 1052647 | 1 | |
Deletion | Chr11 | 1218722 | 1218724 | 2 | |
Deletion | Chr10 | 1265173 | 1265187 | 14 | |
Deletion | Chr9 | 1577732 | 1577743 | 11 | |
Deletion | Chr4 | 3191664 | 3191666 | 2 | |
Deletion | Chr7 | 5295981 | 5295982 | 1 | |
Deletion | Chr8 | 5617523 | 5617525 | 2 | |
Deletion | Chr8 | 6382000 | 6382015 | 15 | |
Deletion | Chr9 | 6995045 | 6995047 | 2 | |
Deletion | Chr11 | 7389981 | 7389987 | 6 | |
Deletion | Chr10 | 7396818 | 7396829 | 11 | |
Deletion | Chr10 | 8461834 | 8461853 | 19 | |
Deletion | Chr1 | 10424099 | 10424100 | 1 | |
Deletion | Chr1 | 14482646 | 14482647 | 1 | |
Deletion | Chr7 | 18598235 | 18598262 | 27 | LOC_Os07g31390 |
Deletion | Chr7 | 19428222 | 19428227 | 5 | |
Deletion | Chr3 | 19999072 | 19999076 | 4 | LOC_Os03g36050 |
Deletion | Chr8 | 21210444 | 21210446 | 2 | |
Deletion | Chr12 | 21935113 | 21935122 | 9 | |
Deletion | Chr5 | 25438563 | 25438571 | 8 | |
Deletion | Chr1 | 26289761 | 26289769 | 8 | |
Deletion | Chr11 | 28607685 | 28607686 | 1 | |
Deletion | Chr2 | 30682040 | 30682053 | 13 | |
Deletion | Chr1 | 36367848 | 36367849 | 1 |
Insertions: 3
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr6 | 26597810 | 26597811 | 2 | |
Insertion | Chr6 | 26597821 | 26597826 | 6 | |
Insertion | Chr6 | 15176289 | 15176289 | 1 |
Inversions: 2
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr5 | 2064450 | 2492153 | |
Inversion | Chr5 | 2066877 | 2492155 |
No Translocation