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Mutant Information

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13598654	C-T	HET
SBS	Chr1	28575831	T-C	Homo
SBS	Chr2	8439651	C-T	Homo
SBS	Chr2	20891847	T-C	Homo
SBS	Chr3	15034015	G-C	HET
SBS	Chr3	23512039	T-C	HET
SBS	Chr4	10338587	G-A	Homo
SBS	Chr4	16177073	C-A	Homo
SBS	Chr4	22405857	G-A	HET
SBS	Chr4	31719592	A-T	HET
SBS	Chr4	33449361	C-A	HET
SBS	Chr5	3457616	T-C	HET
SBS	Chr5	3502312	G-A	HET
SBS	Chr5	5012544	T-A	HET
SBS	Chr5	8328034	C-T	Homo
SBS	Chr5	16275577	G-A	Homo
SBS	Chr5	18166086	G-A	Homo
SBS	Chr6	5721392	T-C	HET
SBS	Chr7	1973176	G-A	Homo
SBS	Chr8	15990742	T-A	Homo
SBS	Chr8	26837187	C-T	Homo
SBS	Chr9	8447897	C-T	Homo
SBS	Chr9	11510786	A-G	HET
SBS	Chr9	11741780	C-T	HET
SBS	Chr9	14972971	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g25050
SBS	Chr10	5324473	T-C	HET
SBS	Chr10	16921161	C-T	Homo
SBS	Chr11	2431932	C-G	Homo
SBS	Chr11	10623326	A-C	HET
SBS	Chr11	11413129	T-C	HET
SBS	Chr11	15422684	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os11g26850
SBS	Chr11	15567450	G-T	HET
SBS	Chr11	15998952	G-A	HET
SBS	Chr11	18307612	G-A	HET
SBS	Chr12	4112210	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g08080
SBS	Chr12	4161436	C-T	HET
SBS	Chr12	11942634	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g20450
SBS	Chr12	13364146	C-T	HET

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	194973	194985	12
Deletion	Chr7	1443126	1443143	17
Deletion	Chr12	4112455	4112456	1	LOC_Os12g08080
Deletion	Chr12	4115007	4115013	6
Deletion	Chr12	4225180	4225181	1	LOC_Os12g08300
Deletion	Chr8	9439017	9439022	5
Deletion	Chr6	9582322	9582323	1
Deletion	Chr11	10126001	10136000	9999	3
Deletion	Chr11	10139001	10209000	69999	8
Deletion	Chr11	10214001	10272000	57999	5
Deletion	Chr9	12064001	12232000	167999	23
Deletion	Chr3	13408463	13408465	2	LOC_Os03g23200
Deletion	Chr8	14262241	14262262	21
Deletion	Chr7	14398466	14398481	15	LOC_Os07g25200
Deletion	Chr12	18181651	18181653	2
Deletion	Chr11	19146651	19146652	1
Deletion	Chr7	20090237	20090239	2
Deletion	Chr7	24569134	24569138	4
Deletion	Chr7	25593592	25593593	1
Deletion	Chr7	25697619	25697623	4	LOC_Os07g42924
Deletion	Chr1	37778557	37778558	1

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	7362967	7362968	2
Insertion	Chr7	20899762	20899765	4
Insertion	Chr10	3644733	3644734	2
Insertion	Chr11	11604456	11604460	5
Insertion	Chr11	15420607	15420619	13	LOC_Os11g26850
Insertion	Chr11	5481470	5481520	51

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	10109074	10278331	LOC_Os11g17990
Inversion	Chr11	10109093	10278337	LOC_Os11g17990
Inversion	Chr10	10664410	10715960
Inversion	Chr10	10664415	10715965
Inversion	Chr2	35058980	35758746	2

Translocations: 10

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	60308	Chr2	8120312	LOC_Os02g14720
Translocation	Chr11	2474541	Chr6	24981541
Translocation	Chr6	7292234	Chr2	18076972	LOC_Os02g30350
Translocation	Chr12	10103828	Chr9	12063887	LOC_Os12g17640
Translocation	Chr12	10104147	Chr9	12234136	LOC_Os12g17640
Translocation	Chr12	10181783	Chr5	6876533
Translocation	Chr12	10182635	Chr5	6876531
Translocation	Chr10	10485188	Chr3	24158434	LOC_Os10g20710
Translocation	Chr8	10934451	Chr2	6633198	LOC_Os08g17820
Translocation	Chr9	12226352	Chr6	23965268	LOC_Os06g40230

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