Search Results
| Mutant Information |
|---|
| Mutant Name | FN3892-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3892-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 26
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr3 | 10337587 | A-T | HET | ||
| SBS | Chr3 | 10337588 | A-T | HET | ||
| SBS | Chr3 | 31424071 | T-C | HET | ||
| SBS | Chr4 | 1605980 | G-A | Homo | ||
| SBS | Chr4 | 25956671 | G-A | HET | ||
| SBS | Chr5 | 15839084 | A-T | HET | ||
| SBS | Chr6 | 12318935 | G-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os06g21330 |
| SBS | Chr6 | 12905785 | A-T | HET | ||
| SBS | Chr6 | 12905786 | G-T | HET | ||
| SBS | Chr6 | 16851510 | A-T | HET | ||
| SBS | Chr6 | 24653687 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g41200 |
| SBS | Chr6 | 30476849 | G-C | Homo | ||
| SBS | Chr7 | 18984209 | A-T | Homo | ||
| SBS | Chr7 | 23367601 | T-A | HET | ||
| SBS | Chr8 | 17774368 | A-T | Homo | ||
| SBS | Chr9 | 3081579 | T-G | Homo | ||
| SBS | Chr9 | 3084431 | G-A | Homo | ||
| SBS | Chr9 | 14594674 | G-T | HET | ||
| SBS | Chr10 | 5708344 | A-C | HET | NON_SYNONYMOUS_CODING | LOC_Os10g10380 |
| SBS | Chr10 | 5840155 | T-G | HET | ||
| SBS | Chr10 | 6092250 | T-A | HET | ||
| SBS | Chr10 | 7514872 | T-C | HET | ||
| SBS | Chr10 | 16689229 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os10g31820 |
| SBS | Chr10 | 18752910 | T-C | HET | ||
| SBS | Chr11 | 12996303 | G-A | Homo | ||
| SBS | Chr12 | 9634335 | T-C | HET |
Deletions: 9
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 3870055 | 3870056 | 1 | |
| Deletion | Chr11 | 5687810 | 5687812 | 2 | |
| Deletion | Chr4 | 5937257 | 5937258 | 1 | |
| Deletion | Chr4 | 7960864 | 7960865 | 1 | |
| Deletion | Chr1 | 11106837 | 11106839 | 2 | LOC_Os01g19600 |
| Deletion | Chr6 | 13299539 | 13299541 | 2 | LOC_Os06g22810 |
| Deletion | Chr10 | 20234187 | 20234246 | 59 | |
| Deletion | Chr11 | 20625149 | 20625154 | 5 | LOC_Os11g35160 |
| Deletion | Chr2 | 30021171 | 30021174 | 3 | LOC_Os02g49090 |
Insertions: 6
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr12 | 3424173 | 3424174 | 2 | |
| Insertion | Chr12 | 26071758 | 26071759 | 2 | |
| Insertion | Chr1 | 21506326 | 21506365 | 40 | |
| Insertion | Chr8 | 8547068 | 8547068 | 1 | |
| Insertion | Chr11 | 18198569 | 18198569 | 1 | LOC_Os11g31220 |
| Insertion | Chr11 | 21228561 | 21228561 | 1 |
Inversions: 10
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr7 | 8039442 | 8039737 | LOC_Os07g14090 |
| Inversion | Chr6 | 12214737 | 12255041 | |
| Inversion | Chr6 | 12253016 | 12255031 | LOC_Os06g21210 |
| Inversion | Chr8 | 15195663 | 16049177 | LOC_Os08g26310 |
| Inversion | Chr3 | 18269897 | 18270176 | |
| Inversion | Chr4 | 18757596 | 19397876 | |
| Inversion | Chr4 | 18757605 | 19397879 | |
| Inversion | Chr4 | 20646637 | 21040492 | |
| Inversion | Chr4 | 20646645 | 21040501 | |
| Inversion | Chr2 | 29274149 | 29274383 | LOC_Os02g47850 |
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr9 | 758251 | Chr3 | 28191320 | LOC_Os09g02070 |
| Translocation | Chr9 | 760062 | Chr3 | 28191330 | LOC_Os09g02070 |
| Translocation | Chr6 | 4820916 | Chr5 | 5212060 | 2 |
| Translocation | Chr12 | 11750882 | Chr1 | 26268536 | LOC_Os01g46169 |
| Translocation | Chr12 | 12144424 | Chr1 | 16265877 | 2 |
| Translocation | Chr8 | 16925915 | Chr4 | 12566300 | |
| Translocation | Chr12 | 20980956 | Chr9 | 6220709 | LOC_Os09g11220 |