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| Mutant Information |
|---|
| Mutant Name | FN3893-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3893-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 29
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 22712851 | A-G | Homo | ||
| SBS | Chr10 | 14873484 | C-T | Homo | ||
| SBS | Chr10 | 16089661 | A-T | Homo | ||
| SBS | Chr10 | 16839702 | G-A | Homo | ||
| SBS | Chr12 | 12610525 | G-T | Homo | ||
| SBS | Chr2 | 9322527 | G-T | HET | ||
| SBS | Chr3 | 13009970 | T-C | HET | ||
| SBS | Chr3 | 35719744 | T-C | HET | NON_SYNONYMOUS_CODING | LOC_Os03g63210 |
| SBS | Chr3 | 35719747 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os03g63210 |
| SBS | Chr3 | 7038568 | T-C | HET | ||
| SBS | Chr4 | 18732239 | A-G | HET | ||
| SBS | Chr4 | 2851182 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g05610 |
| SBS | Chr4 | 2851183 | A-C | HET | NON_SYNONYMOUS_CODING | LOC_Os04g05610 |
| SBS | Chr4 | 31743501 | A-T | HET | ||
| SBS | Chr4 | 32673448 | G-T | HET | ||
| SBS | Chr4 | 33987675 | T-G | HET | ||
| SBS | Chr4 | 8228849 | C-T | Homo | ||
| SBS | Chr5 | 17728407 | C-T | HET | ||
| SBS | Chr5 | 2251473 | G-A | Homo | ||
| SBS | Chr5 | 6425874 | A-G | Homo | ||
| SBS | Chr5 | 6465925 | C-T | Homo | ||
| SBS | Chr6 | 15711510 | T-G | HET | ||
| SBS | Chr6 | 20454048 | G-A | Homo | ||
| SBS | Chr6 | 25262300 | A-G | HET | ||
| SBS | Chr6 | 7754765 | G-A | HET | ||
| SBS | Chr7 | 26527974 | C-T | Homo | ||
| SBS | Chr8 | 7855079 | A-T | HET | ||
| SBS | Chr8 | 8668664 | G-T | HET | ||
| SBS | Chr8 | 9154882 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os08g15110 |
Deletions: 17
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr7 | 648087 | 648099 | 12 | |
| Deletion | Chr7 | 3514265 | 3514266 | 1 | |
| Deletion | Chr10 | 4071632 | 4071635 | 3 | LOC_Os10g07554 |
| Deletion | Chr11 | 5483146 | 5483152 | 6 | |
| Deletion | Chr5 | 6425066 | 6425075 | 9 | |
| Deletion | Chr5 | 6529332 | 6529333 | 1 | |
| Deletion | Chr3 | 6613745 | 6613748 | 3 | |
| Deletion | Chr7 | 10040287 | 10040289 | 2 | |
| Deletion | Chr11 | 14013371 | 14013389 | 18 | |
| Deletion | Chr11 | 14321047 | 14321049 | 2 | |
| Deletion | Chr3 | 20368696 | 20368698 | 2 | |
| Deletion | Chr2 | 23609584 | 23609587 | 3 | LOC_Os02g39090 |
| Deletion | Chr11 | 25884540 | 25884544 | 4 | |
| Deletion | Chr12 | 26790032 | 26790044 | 12 | |
| Deletion | Chr3 | 28891920 | 28891921 | 1 | |
| Deletion | Chr4 | 31476905 | 31476912 | 7 | LOC_Os04g52850 |
| Deletion | Chr1 | 32125651 | 32125658 | 7 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 4574482 | 4574485 | 4 | |
| Insertion | Chr6 | 25007543 | 25007544 | 2 | |
| Insertion | Chr7 | 14662587 | 14662587 | 1 | |
| Insertion | Chr8 | 13064848 | 13064855 | 8 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr12 | 967710 | 1114376 | |
| Inversion | Chr12 | 967717 | 1114418 |
No Translocation