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| Mutant Information |
|---|
| Mutant Name | FN3896-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3896-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 22
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 23193697 | T-A | HET | ||
| SBS | Chr1 | 3577278 | T-A | Homo | ||
| SBS | Chr1 | 36586329 | C-A | HET | ||
| SBS | Chr1 | 39051890 | A-G | HET | ||
| SBS | Chr10 | 11478610 | T-C | HET | ||
| SBS | Chr11 | 19140242 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os11g32420 |
| SBS | Chr11 | 22604611 | C-T | HET | ||
| SBS | Chr2 | 20583252 | C-T | Homo | ||
| SBS | Chr3 | 14621758 | G-A | Homo | ||
| SBS | Chr3 | 23603203 | T-A | Homo | ||
| SBS | Chr3 | 25577455 | C-T | Homo | ||
| SBS | Chr3 | 28801985 | C-T | Homo | ||
| SBS | Chr3 | 5237138 | C-T | HET | ||
| SBS | Chr6 | 23222769 | T-C | HET | ||
| SBS | Chr6 | 25138573 | G-T | HET | STOP_GAINED | LOC_Os06g41900 |
| SBS | Chr6 | 6007815 | C-T | HET | ||
| SBS | Chr7 | 12540678 | G-A | HET | ||
| SBS | Chr7 | 13826061 | T-G | HET | ||
| SBS | Chr7 | 13826062 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os07g24310 |
| SBS | Chr7 | 14731358 | G-C | HET | ||
| SBS | Chr7 | 17931340 | G-A | HET | ||
| SBS | Chr7 | 27276651 | G-A | HET |
Deletions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr4 | 19854168 | 19854178 | 10 | |
| Deletion | Chr2 | 26912808 | 26912897 | 89 | |
| Deletion | Chr7 | 28287695 | 28287696 | 1 | |
| Deletion | Chr5 | 29885400 | 29885754 | 354 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 17989059 | 17989176 | 118 | |
| Insertion | Chr3 | 24372293 | 24372298 | 6 | LOC_Os03g43610 |
| Insertion | Chr4 | 33911351 | 33911351 | 1 | |
| Insertion | Chr7 | 4124573 | 4124574 | 2 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr7 | 2539315 | 2831226 | LOC_Os07g05470 |
| Inversion | Chr7 | 2539334 | 2831227 | LOC_Os07g05470 |
Translocations: 15
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 435667 | Chr11 | 392836 | 2 |
| Translocation | Chr5 | 722618 | Chr3 | 28717930 | |
| Translocation | Chr10 | 921401 | Chr3 | 10048326 | |
| Translocation | Chr7 | 1241762 | Chr1 | 39841277 | |
| Translocation | Chr9 | 2459493 | Chr5 | 17936928 | 2 |
| Translocation | Chr6 | 4548332 | Chr3 | 16853855 | |
| Translocation | Chr12 | 11274326 | Chr7 | 8261482 | LOC_Os12g19381 |
| Translocation | Chr12 | 12548032 | Chr10 | 18187574 | LOC_Os12g22260 |
| Translocation | Chr7 | 13236653 | Chr5 | 9247535 | LOC_Os07g23440 |
| Translocation | Chr12 | 13550655 | Chr6 | 21523999 | LOC_Os12g23830 |
| Translocation | Chr6 | 17162296 | Chr3 | 27534506 | LOC_Os06g29810 |
| Translocation | Chr6 | 17162950 | Chr3 | 27534518 | LOC_Os06g29810 |
| Translocation | Chr6 | 17163606 | Chr5 | 370526 | 2 |
| Translocation | Chr5 | 20725910 | Chr2 | 5558207 | LOC_Os05g34880 |
| Translocation | Chr11 | 28627002 | Chr10 | 752823 |