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Mutant Information

Mutant Name	FN3900-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3900-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 16

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	25667870	T-C	HET
SBS	Chr1	28798916	C-A	Homo
SBS	Chr1	9122200	T-C	Homo
SBS	Chr10	1473936	C-T	Homo
SBS	Chr11	23762368	G-T	HET
SBS	Chr11	4039165	T-A	HET
SBS	Chr12	21168045	T-C	HET
SBS	Chr12	22901867	C-T	Homo
SBS	Chr2	14842492	C-T	Homo
SBS	Chr2	17459912	C-A	HET
SBS	Chr3	13502297	G-A	HET
SBS	Chr6	31136541	T-A	HET
SBS	Chr6	3690195	C-T	Homo
SBS	Chr7	14442437	C-A	HET
SBS	Chr7	44315	C-T	HET
SBS	Chr8	10436641	A-T	HET

Deletions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	7124144	7124151	7
Deletion	Chr6	14498925	14498930	5

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	40871357	40871357	1
Insertion	Chr2	35360402	35360404	3
Insertion	Chr5	11965739	11965742	4
Insertion	Chr5	29632057	29632059	3
Insertion	Chr6	2216295	2216296	2
Insertion	Chr8	12039186	12039187	2
Insertion	Chr9	8299252	8299252	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	28157318	28185449	LOC_Os07g47140
Inversion	Chr7	28157323	28186234	LOC_Os07g47140

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	6190467	Chr9	1170742	LOC_Os11g11180
Translocation	Chr8	9661087	Chr5	4928417
Translocation	Chr8	10108733	Chr6	18097966	LOC_Os08g16490
Translocation	Chr12	10778271	Chr8	1357438	LOC_Os08g03030
Translocation	Chr12	10781792	Chr8	1357433	LOC_Os08g03030
Translocation	Chr4	11340672	Chr1	25907670
Translocation	Chr7	17506799	Chr6	8363789	2