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Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12324754	T-C	HET	INTERGENIC
SBS	Chr1	29594985	A-G	HET	INTERGENIC
SBS	Chr1	43074558	A-T	HET	INTRON
SBS	Chr1	8954081	T-A	HET	INTERGENIC
SBS	Chr1	8954086	T-A	HET	INTERGENIC
SBS	Chr10	13996322	T-G	HET	INTERGENIC
SBS	Chr10	16104486	C-T	HOMO	INTERGENIC
SBS	Chr10	5727285	A-G	HET	INTERGENIC
SBS	Chr10	8911839	A-C	HET	INTERGENIC
SBS	Chr11	12683377	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr11	24237317	T-A	HOMO	INTERGENIC
SBS	Chr11	6289819	A-C	HOMO	INTRON
SBS	Chr12	14794985	C-T	HET	INTERGENIC
SBS	Chr12	2798497	C-T	HET	SYNONYMOUS_CODING
SBS	Chr12	3006927	T-C	HET	INTERGENIC
SBS	Chr2	18544458	A-T	HET	INTERGENIC
SBS	Chr2	24252908	A-T	HET	INTERGENIC
SBS	Chr3	14413091	C-T	HOMO	INTERGENIC
SBS	Chr3	15000890	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g26210
SBS	Chr3	20256583	G-A	HET	INTRON
SBS	Chr3	7129959	C-T	HOMO	INTRON
SBS	Chr4	13074275	T-C	HOMO	INTERGENIC
SBS	Chr4	13720879	C-A	HET	INTERGENIC
SBS	Chr5	24448941	C-A	HET	INTERGENIC
SBS	Chr5	25734424	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g44240
SBS	Chr5	4862221	A-G	HET	INTRON
SBS	Chr5	5379369	C-T	HOMO	INTERGENIC
SBS	Chr6	24869242	T-A	HOMO	SYNONYMOUS_CODING
SBS	Chr7	11658994	G-T	HOMO	STOP_GAINED	LOC_Os07g20200
SBS	Chr8	13091428	C-T	HET	INTERGENIC
SBS	Chr8	1544448	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g03330
SBS	Chr8	3888824	C-T	HOMO	INTERGENIC
SBS	Chr8	4295690	G-T	HET	INTERGENIC
SBS	Chr9	5827168	G-A	HET	UTR_3_PRIME

Deletions: 31

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	1711358	1711368	10
Deletion	Chr7	2804425	2804430	5
Deletion	Chr5	3466387	3466392	5
Deletion	Chr4	4051112	4051114	2
Deletion	Chr11	7849673	7849683	10
Deletion	Chr7	8984896	8984897	1
Deletion	Chr7	9193067	9193090	23
Deletion	Chr11	9412195	9412196	1
Deletion	Chr9	9588698	9588699	1
Deletion	Chr10	10568634	10568638	4
Deletion	Chr1	11931981	11932021	40
Deletion	Chr11	12680360	12680373	13
Deletion	Chr5	14206712	14206720	8
Deletion	Chr1	16493524	16493528	4	LOC_Os01g29409
Deletion	Chr8	16922091	16922092	1
Deletion	Chr4	18319973	18319976	3	LOC_Os04g30660
Deletion	Chr4	18808711	18808712	1
Deletion	Chr11	20487234	20487236	2
Deletion	Chr11	20622834	20622844	10
Deletion	Chr10	21654437	21654441	4
Deletion	Chr8	22135462	22135478	16
Deletion	Chr10	22557369	22557371	2
Deletion	Chr5	24503154	24503159	5
Deletion	Chr5	24518239	24518241	2
Deletion	Chr5	25508645	25508656	11
Deletion	Chr6	25720753	25720763	10
Deletion	Chr11	25763803	25763804	1
Deletion	Chr6	28548078	28548093	15
Deletion	Chr5	29223650	29223651	1	LOC_Os05g50920
Deletion	Chr2	29535381	29535391	10
Deletion	Chr1	37394001	37394002	1

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	19885328	19885328	1
Insertion	Chr11	10895601	10895601	1
Insertion	Chr2	17305393	17305394	2
Insertion	Chr3	32604039	32604039	1
Insertion	Chr6	5718480	5718481	2
Insertion	Chr8	15740446	15740447	2
Insertion	Chr8	20289288	20289290	3
Insertion	Chr8	9879762	9879763	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	11616744	29505948
Inversion	Chr5	27738935	29505940

No Translocation

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