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| Mutant Information |
|---|
| Mutant Name | FN3910-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3910-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 27
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 10857197 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g19190 |
| SBS | Chr1 | 10857198 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g19190 |
| SBS | Chr1 | 27379991 | G-T | HET | ||
| SBS | Chr1 | 31723948 | C-T | HET | ||
| SBS | Chr1 | 42106751 | C-T | HET | ||
| SBS | Chr10 | 3341790 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os10g06510 |
| SBS | Chr10 | 6256361 | G-T | HET | ||
| SBS | Chr11 | 11833309 | C-T | HET | ||
| SBS | Chr11 | 17542950 | C-A | Homo | STOP_GAINED | LOC_Os11g30170 |
| SBS | Chr12 | 3139580 | T-A | Homo | ||
| SBS | Chr12 | 3139581 | A-T | Homo | ||
| SBS | Chr12 | 3139582 | A-T | Homo | ||
| SBS | Chr2 | 10053298 | A-G | HET | ||
| SBS | Chr2 | 20949560 | G-A | HET | ||
| SBS | Chr3 | 19615387 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os03g35370 |
| SBS | Chr3 | 21594906 | A-T | HET | ||
| SBS | Chr3 | 24537750 | C-T | Homo | ||
| SBS | Chr3 | 29517619 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os03g51580 |
| SBS | Chr4 | 11432790 | G-A | HET | ||
| SBS | Chr4 | 18572228 | G-T | Homo | ||
| SBS | Chr4 | 23590517 | C-T | HET | ||
| SBS | Chr4 | 31465063 | T-A | HET | ||
| SBS | Chr5 | 23265994 | A-T | HET | NON_SYNONYMOUS_CODING | LOC_Os05g39620 |
| SBS | Chr6 | 1263946 | C-A | HET | ||
| SBS | Chr6 | 24507371 | G-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os06g41030 |
| SBS | Chr6 | 28063756 | G-T | HET | ||
| SBS | Chr6 | 3593879 | C-A | HET |
Deletions: 12
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 3104640 | 3104650 | 10 | |
| Deletion | Chr10 | 3314486 | 3314504 | 18 | LOC_Os10g06440 |
| Deletion | Chr6 | 5057507 | 5057518 | 11 | |
| Deletion | Chr5 | 6886452 | 6886454 | 2 | |
| Deletion | Chr5 | 11875374 | 11875386 | 12 | LOC_Os05g20270 |
| Deletion | Chr11 | 12828951 | 12828952 | 1 | |
| Deletion | Chr3 | 17135542 | 17135543 | 1 | LOC_Os03g30030 |
| Deletion | Chr1 | 20181202 | 20181203 | 1 | |
| Deletion | Chr7 | 21057888 | 21057895 | 7 | |
| Deletion | Chr5 | 23294001 | 23321000 | 26999 | 6 |
| Deletion | Chr3 | 24536829 | 24536834 | 5 | |
| Deletion | Chr5 | 28754077 | 28754078 | 1 |
Insertions: 5
No Inversion
Translocations: 8
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr7 | 773297 | Chr1 | 30726344 | LOC_Os07g02310 |
| Translocation | Chr7 | 797831 | Chr2 | 13132178 | 2 |
| Translocation | Chr12 | 11358092 | Chr10 | 3684969 | LOC_Os10g07030 |
| Translocation | Chr2 | 13127764 | Chr1 | 30726909 | LOC_Os02g22070 |
| Translocation | Chr11 | 25036776 | Chr7 | 798563 | LOC_Os07g02340 |
| Translocation | Chr11 | 27756863 | Chr4 | 3131212 | |
| Translocation | Chr11 | 28034816 | Chr10 | 1923431 | LOC_Os10g04140 |
| Translocation | Chr4 | 32799984 | Chr3 | 5096190 |