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Mutant Information

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17056201	C-T	HET
SBS	Chr1	33057614	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g57210
SBS	Chr1	37363416	C-G	HET
SBS	Chr10	13195487	C-T	Homo
SBS	Chr11	7617662	G-A	HET
SBS	Chr12	14283473	T-C	Homo
SBS	Chr12	16875212	A-G	HET
SBS	Chr2	1009680	G-C	HET
SBS	Chr2	1241747	T-G	HET
SBS	Chr2	26317181	T-A	HET
SBS	Chr2	9049860	G-A	HET
SBS	Chr3	31553527	A-T	HET
SBS	Chr4	10813061	G-A	HET
SBS	Chr4	1689146	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g03780
SBS	Chr4	9087918	A-G	HET
SBS	Chr5	10717157	T-C	Homo
SBS	Chr5	22467656	C-T	HET
SBS	Chr5	26047312	G-A	HET	STOP_GAINED	LOC_Os05g44792
SBS	Chr5	6654660	C-G	Homo
SBS	Chr6	14718480	T-C	Homo
SBS	Chr6	30344903	T-C	HET
SBS	Chr6	30344912	T-A	HET
SBS	Chr7	19044128	T-C	Homo
SBS	Chr7	19156138	C-T	Homo
SBS	Chr7	20867729	A-C	Homo
SBS	Chr7	25789836	C-A	HET
SBS	Chr7	4686278	G-T	HET
SBS	Chr7	8244781	T-C	HET
SBS	Chr9	16884463	G-A	HET
SBS	Chr9	7096861	G-T	Homo

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	4703728	4703743	15
Deletion	Chr10	4893263	4893268	5
Deletion	Chr11	9220001	9394000	173999	28
Deletion	Chr10	10656001	10770000	113999	10
Deletion	Chr5	10717291	10717298	7
Deletion	Chr12	12955809	12955813	4
Deletion	Chr8	13111764	13111767	3
Deletion	Chr1	15668001	15703000	34999	4
Deletion	Chr1	17301126	17301127	1
Deletion	Chr10	20509446	20509447	1
Deletion	Chr10	20882843	20882844	1
Deletion	Chr10	21782853	21782854	1
Deletion	Chr6	24139731	24139739	8	LOC_Os06g40500
Deletion	Chr8	24721718	24721720	2
Deletion	Chr5	28857862	28857863	1
Deletion	Chr4	28947072	28948009	937
Deletion	Chr1	31079191	31079196	5

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	17057524	17057525	2	LOC_Os01g31190
Insertion	Chr8	12465023	12465024	2

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	21623822	22099776	LOC_Os01g38480
Inversion	Chr1	21623824	22099778	LOC_Os01g38480
Inversion	Chr5	28779371	28830671	2
Inversion	Chr5	28779376	28830681	2

Translocations: 11

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	2527047	Chr3	24316454	2
Translocation	Chr5	7841089	Chr1	219871	LOC_Os01g01440
Translocation	Chr10	10766773	Chr7	17827809	LOC_Os07g30180
Translocation	Chr10	10767367	Chr7	17827804	LOC_Os07g30180
Translocation	Chr6	12543840	Chr3	14810910	LOC_Os06g21700
Translocation	Chr4	16584622	Chr2	20382715	LOC_Os04g28090
Translocation	Chr6	21271403	Chr3	30751530	LOC_Os03g53630
Translocation	Chr6	21287144	Chr3	30751533	LOC_Os03g53630
Translocation	Chr11	24621585	Chr8	9667766	LOC_Os08g15880
Translocation	Chr11	27569084	Chr5	16490291
Translocation	Chr11	27773879	Chr6	7545889

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