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| Mutant Information |
|---|
| Mutant Name | FN3914-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3914-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 27
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 31513411 | T-C | Homo | ||
| SBS | Chr1 | 38540602 | T-C | Homo | ||
| SBS | Chr10 | 12820656 | G-A | HET | ||
| SBS | Chr11 | 14751789 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os11g25880 |
| SBS | Chr11 | 18573315 | G-A | HET | ||
| SBS | Chr11 | 19967796 | C-T | HET | ||
| SBS | Chr11 | 4757128 | C-T | HET | ||
| SBS | Chr2 | 11016253 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os02g18880 |
| SBS | Chr2 | 27570241 | T-C | HET | ||
| SBS | Chr2 | 27959216 | T-C | HET | ||
| SBS | Chr3 | 13051988 | A-G | Homo | ||
| SBS | Chr3 | 18620953 | C-T | HET | ||
| SBS | Chr3 | 19201946 | G-T | Homo | ||
| SBS | Chr3 | 9804901 | C-G | HET | ||
| SBS | Chr4 | 15054529 | A-C | HET | NON_SYNONYMOUS_CODING | LOC_Os04g25890 |
| SBS | Chr4 | 16025565 | C-T | HET | ||
| SBS | Chr4 | 27829060 | C-A | HET | ||
| SBS | Chr5 | 154260 | G-T | Homo | ||
| SBS | Chr5 | 20019172 | G-T | Homo | ||
| SBS | Chr5 | 20019174 | C-G | Homo | ||
| SBS | Chr5 | 28775073 | G-A | HET | ||
| SBS | Chr5 | 28775074 | G-A | HET | ||
| SBS | Chr6 | 13066965 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os06g22480 |
| SBS | Chr7 | 23737033 | G-T | HET | ||
| SBS | Chr7 | 6464176 | C-T | Homo | NON_SYNONYMOUS_CODING | LOC_Os07g11680 |
| SBS | Chr8 | 10728005 | G-C | HET | ||
| SBS | Chr8 | 5937658 | G-A | Homo |
Deletions: 11
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr5 | 5134396 | 5134486 | 90 | |
| Deletion | Chr7 | 5614057 | 5614060 | 3 | LOC_Os07g10460 |
| Deletion | Chr5 | 6328351 | 6328355 | 4 | |
| Deletion | Chr5 | 6702702 | 6702705 | 3 | LOC_Os05g11790 |
| Deletion | Chr5 | 7405951 | 7405964 | 13 | |
| Deletion | Chr1 | 10884004 | 10884006 | 2 | |
| Deletion | Chr4 | 12022001 | 12101000 | 78999 | 11 |
| Deletion | Chr7 | 12175977 | 12175978 | 1 | |
| Deletion | Chr2 | 18758234 | 18758235 | 1 | |
| Deletion | Chr4 | 23486214 | 23486224 | 10 | |
| Deletion | Chr2 | 25534571 | 25534574 | 3 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr2 | 10870467 | 10870469 | 3 | LOC_Os02g18660 |
| Insertion | Chr2 | 21719058 | 21719059 | 2 | |
| Insertion | Chr3 | 23791938 | 23791938 | 1 | |
| Insertion | Chr7 | 17037241 | 17037244 | 4 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr9 | 12554738 | 12554845 | |
| Inversion | Chr3 | 18896402 | 19723883 | 2 |
Translocations: 12
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr5 | 287935 | Chr3 | 35948634 | LOC_Os05g01490 |
| Translocation | Chr11 | 4853199 | Chr8 | 10967150 | LOC_Os08g17870 |
| Translocation | Chr11 | 4853213 | Chr3 | 31495159 | |
| Translocation | Chr12 | 6215478 | Chr2 | 1697549 | |
| Translocation | Chr6 | 6426492 | Chr4 | 12118921 | LOC_Os04g21430 |
| Translocation | Chr10 | 6817377 | Chr6 | 18374054 | 2 |
| Translocation | Chr5 | 7016388 | Chr1 | 244865 | |
| Translocation | Chr7 | 11777384 | Chr2 | 16654924 | |
| Translocation | Chr9 | 18185387 | Chr1 | 10302829 | LOC_Os09g29910 |
| Translocation | Chr11 | 21139134 | Chr7 | 13468415 | LOC_Os11g35970 |
| Translocation | Chr10 | 22644002 | Chr8 | 19750312 | LOC_Os10g42100 |
| Translocation | Chr12 | 25617355 | Chr6 | 6426492 |