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Mutant Information

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	27170807	A-G	HET
SBS	Chr1	36968918	C-T	HET
SBS	Chr1	37580384	T-A	Homo
SBS	Chr1	42116111	C-T	Homo
SBS	Chr1	9422319	A-T	Homo
SBS	Chr11	11642319	G-A	HET	STOP_GAINED	LOC_Os11g20150
SBS	Chr12	1018766	C-T	HET
SBS	Chr12	17134977	G-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g28970
SBS	Chr12	19574496	C-T	HET
SBS	Chr12	22856049	T-C	HET
SBS	Chr3	12225238	T-A	HET
SBS	Chr3	23123639	G-A	Homo
SBS	Chr3	28043010	G-A	Homo
SBS	Chr3	35530880	C-T	HET
SBS	Chr4	4492850	T-C	HET
SBS	Chr4	9400552	G-A	HET
SBS	Chr4	9754840	C-T	HET
SBS	Chr5	11729884	T-C	HET
SBS	Chr5	11729885	G-T	HET
SBS	Chr5	7862338	G-A	HET
SBS	Chr6	19778286	C-T	HET
SBS	Chr8	12324413	C-T	Homo
SBS	Chr8	22770778	G-A	HET
SBS	Chr8	8891300	A-T	HET
SBS	Chr9	13638879	A-G	Homo
SBS	Chr9	5123309	G-A	HET
SBS	Chr9	5534498	G-T	HET
SBS	Chr9	6420363	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g11500

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	3700703	3700709	6
Deletion	Chr5	4530110	4530111	1
Deletion	Chr8	8388697	8388699	2
Deletion	Chr3	8783001	8846000	62999	16
Deletion	Chr1	9595315	9595316	1
Deletion	Chr1	9794554	9794566	12
Deletion	Chr1	12177352	12177370	18
Deletion	Chr9	12983372	12983378	6
Deletion	Chr1	13864321	13864335	14
Deletion	Chr11	14360648	14360654	6
Deletion	Chr4	15182299	15182300	1
Deletion	Chr6	16706213	16706214	1
Deletion	Chr3	20191221	20191244	23
Deletion	Chr3	21306871	21306872	1
Deletion	Chr2	32227606	32227614	8
Deletion	Chr1	42889149	42889163	14

Insertions: 3

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr2	9367128	9367131	4
Insertion	Chr6	16047166	16047447	282
Insertion	Chr7	634561	634569	9

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr3	8915352	9243684
Inversion	Chr3	8915467	9243695
Inversion	Chr11	13409999	13614987
Inversion	Chr1	33545708	33545864

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	1197	Chr7	1263
Translocation	Chr8	18084447	Chr1	30278997	LOC_Os01g52680
Translocation	Chr8	18084508	Chr1	30279605	LOC_Os01g52680
Translocation	Chr9	21805690	Chr5	6399762	LOC_Os09g37840
Translocation	Chr11	28348539	Chr1	23458445
Translocation	Chr11	29010103	Chr3	31102232
Translocation	Chr4	32282935	Chr3	21730671	LOC_Os03g39110

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