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Mutant Information

Variant Information

Single base substitutions: 39

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7084378	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g12790
SBS	Chr1	11855145	A-G	HET
SBS	Chr1	14333821	C-T	HET
SBS	Chr2	31241509	C-T	HET
SBS	Chr3	1242000	G-A	Homo
SBS	Chr3	4360133	T-A	HET	STOP_GAINED	LOC_Os03g08480
SBS	Chr3	6006875	C-T	HET
SBS	Chr3	10001685	C-G	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g17960
SBS	Chr3	20187127	C-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g36419
SBS	Chr3	20187128	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os03g36419
SBS	Chr3	20779423	G-A	Homo
SBS	Chr3	28355359	G-T	Homo
SBS	Chr4	4533797	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g08440
SBS	Chr4	9081809	G-C	HET
SBS	Chr4	9631447	C-T	HET
SBS	Chr4	16250695	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os04g27490
SBS	Chr4	34266962	G-A	HET
SBS	Chr5	16009713	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g27520
SBS	Chr5	17332862	A-G	HET
SBS	Chr5	17579643	C-T	HET
SBS	Chr5	27428050	G-T	HET
SBS	Chr6	6734297	C-T	HET
SBS	Chr6	12214809	G-A	HET
SBS	Chr6	27916476	T-C	HET
SBS	Chr7	13188547	G-A	Homo
SBS	Chr8	14079423	C-A	Homo
SBS	Chr8	16639662	A-G	HET
SBS	Chr8	25704721	G-T	HET
SBS	Chr9	893647	G-A	HET
SBS	Chr9	4332497	G-T	HET
SBS	Chr9	6197893	G-T	HET
SBS	Chr10	37619	G-A	HET
SBS	Chr10	21820242	C-T	HET
SBS	Chr11	6389658	A-C	HET
SBS	Chr11	12803556	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g22336
SBS	Chr11	14780400	G-A	HET
SBS	Chr12	21628505	C-T	HET
SBS	Chr12	23544543	C-A	HET
SBS	Chr12	25618887	C-A	HET

Deletions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	1509201	1509207	6
Deletion	Chr10	2774001	2822000	47999	7
Deletion	Chr3	4128219	4128224	5
Deletion	Chr4	6599611	6599612	1
Deletion	Chr9	8963674	8963688	14
Deletion	Chr12	12748236	12748262	26	LOC_Os12g22590
Deletion	Chr8	15171857	15171948	91
Deletion	Chr10	16320446	16320460	14
Deletion	Chr5	16535092	16535101	9
Deletion	Chr8	17058106	17058156	50
Deletion	Chr3	19023370	19023374	4	LOC_Os03g33250
Deletion	Chr9	19804797	19804799	2
Deletion	Chr5	23004744	23004751	7	LOC_Os05g39230
Deletion	Chr4	26264165	26264177	12
Deletion	Chr12	26403639	26403646	7
Deletion	Chr2	29236697	29236702	5
Deletion	Chr3	32888001	32951000	62999	12
Deletion	Chr1	33095299	33095329	30	LOC_Os01g57270

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr3	17003712	17003713	2
Insertion	Chr6	980270	980271	2
Insertion	Chr7	1871112	1871112	1
Insertion	Chr1	14351767	14351844	78
Insertion	Chr4	1579844	1579909	66
Insertion	Chr11	7848889	7848889	1
Insertion	Chr11	16230816	16230816	1
Insertion	Chr12	1227018	1227018	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	9265589	9834435
Inversion	Chr11	9265632	9834447

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	16667203	Chr2	35527139	2
Translocation	Chr10	16667206	Chr2	35526853	2
Translocation	Chr3	22761146	Chr1	29385505	LOC_Os01g51140
Translocation	Chr6	23392641	Chr2	20261349
Translocation	Chr6	23454674	Chr2	19681247

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