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| Mutant Information |
|---|
| Mutant Name | FN3917-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3917-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 24
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 21097487 | T-A | Homo | ||
| SBS | Chr10 | 10615797 | G-A | HET | ||
| SBS | Chr10 | 18263606 | G-A | HET | ||
| SBS | Chr12 | 5278134 | C-G | Homo | ||
| SBS | Chr2 | 21326833 | G-C | HET | ||
| SBS | Chr3 | 9590162 | T-G | HET | ||
| SBS | Chr4 | 10185762 | G-A | HET | ||
| SBS | Chr4 | 13730730 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os04g24030 |
| SBS | Chr4 | 20171411 | T-A | HET | ||
| SBS | Chr4 | 30935847 | G-A | HET | ||
| SBS | Chr4 | 33506322 | T-C | HET | ||
| SBS | Chr4 | 8272711 | G-C | HET | ||
| SBS | Chr5 | 16716381 | G-T | HET | ||
| SBS | Chr5 | 26666563 | C-T | Homo | ||
| SBS | Chr6 | 13470711 | A-C | HET | ||
| SBS | Chr6 | 1650495 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os06g04040 |
| SBS | Chr6 | 6421750 | G-T | HET | ||
| SBS | Chr7 | 20226659 | T-C | Homo | ||
| SBS | Chr7 | 22486254 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os07g37540 |
| SBS | Chr7 | 9231280 | G-A | HET | ||
| SBS | Chr8 | 5256497 | C-G | Homo | NON_SYNONYMOUS_CODING | LOC_Os08g09050 |
| SBS | Chr8 | 6107149 | T-C | Homo | ||
| SBS | Chr9 | 6248532 | T-C | HET | ||
| SBS | Chr9 | 685512 | G-A | Homo |
Deletions: 16
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 2841975 | 2841984 | 9 | |
| Deletion | Chr2 | 2929020 | 2929036 | 16 | LOC_Os02g05900 |
| Deletion | Chr8 | 8705138 | 8705139 | 1 | |
| Deletion | Chr6 | 12771798 | 12771808 | 10 | |
| Deletion | Chr5 | 15649001 | 15712000 | 62999 | 6 |
| Deletion | Chr8 | 15901322 | 15901336 | 14 | |
| Deletion | Chr12 | 17253032 | 17253038 | 6 | |
| Deletion | Chr8 | 17349982 | 17349984 | 2 | |
| Deletion | Chr8 | 17665306 | 17665312 | 6 | |
| Deletion | Chr2 | 19489165 | 19489169 | 4 | |
| Deletion | Chr2 | 20014171 | 20014177 | 6 | |
| Deletion | Chr11 | 20208385 | 20208389 | 4 | |
| Deletion | Chr4 | 21424562 | 21424563 | 1 | LOC_Os04g35250 |
| Deletion | Chr3 | 27709667 | 27709668 | 1 | |
| Deletion | Chr5 | 29383535 | 29383539 | 4 | LOC_Os05g51230 |
| Deletion | Chr1 | 29410553 | 29410554 | 1 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 7247683 | 7247686 | 4 | |
| Insertion | Chr2 | 15513158 | 15513181 | 24 | |
| Insertion | Chr4 | 30935856 | 30935856 | 1 | |
| Insertion | Chr6 | 25699085 | 25699086 | 2 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr4 | 9874447 | 9963924 | |
| Inversion | Chr4 | 9874450 | 9963926 |
Translocations: 4
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 8053077 | Chr7 | 14407267 | 2 |
| Translocation | Chr12 | 11834439 | Chr3 | 15243546 | 2 |
| Translocation | Chr11 | 15308533 | Chr6 | 30259208 | |
| Translocation | Chr11 | 25739383 | Chr1 | 41115482 |