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Mutant Information

Mutant Name	FN3920-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3920-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 16

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	30018253	C-A	HET
SBS	Chr1	37328202	A-G	HET
SBS	Chr3	18310963	C-T	Homo
SBS	Chr4	1467766	T-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os04g03420
SBS	Chr4	1467767	G-A	Homo	STOP_GAINED	LOC_Os04g03420
SBS	Chr4	12713966	C-A	HET
SBS	Chr4	24620269	C-A	HET	STOP_GAINED	LOC_Os04g41510
SBS	Chr5	29609817	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g51630
SBS	Chr6	11805355	C-T	Homo
SBS	Chr6	14332298	T-C	Homo
SBS	Chr6	15361854	C-T	Homo
SBS	Chr6	24741363	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os06g41330
SBS	Chr7	2030721	A-G	HET
SBS	Chr8	9721548	C-T	HET
SBS	Chr11	15096452	C-T	HET
SBS	Chr12	4388401	T-A	Homo	NON_SYNONYMOUS_CODING	LOC_Os12g08640

Deletions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	701702	701703	1
Deletion	Chr3	2696799	2696810	11
Deletion	Chr4	4038139	4038146	7	LOC_Os04g07590
Deletion	Chr2	6254173	6254176	3
Deletion	Chr12	8228998	8229015	17	LOC_Os12g14430
Deletion	Chr4	11663448	11663451	3	LOC_Os04g20790
Deletion	Chr10	12748646	12748647	1
Deletion	Chr6	13186616	13186628	12
Deletion	Chr5	14693001	14703000	9999	2
Deletion	Chr2	19868605	19868606	1
Deletion	Chr6	21265308	21265438	130	LOC_Os06g36290
Deletion	Chr9	21803725	21803726	1	LOC_Os09g37840
Deletion	Chr5	25660375	25660377	2
Deletion	Chr6	29592556	29592559	3
Deletion	Chr4	32617130	32617135	5
Deletion	Chr1	34930694	34930695	1

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr7	21969302	21969303	2
Insertion	Chr2	26840177	26840177	1
Insertion	Chr3	29712908	29712909	2
Insertion	Chr5	11146288	11146288	1
Insertion	Chr8	17916507	17916507	1
Insertion	Chr8	22128873	22128873	1
Insertion	Chr9	18313692	18313728	37

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	11250880	11251002	LOC_Os09g18340
Inversion	Chr3	13458080	13459179	LOC_Os03g23250

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	84922	Chr6	22815088
Translocation	Chr10	10189304	Chr4	14595105
Translocation	Chr5	14703343	Chr4	19456200	2
Translocation	Chr11	15952959	Chr7	11854568
Translocation	Chr11	22977148	Chr7	3511788	LOC_Os07g07094
Translocation	Chr11	23833237	Chr4	13589819
Translocation	Chr8	27473648	Chr1	3092966	LOC_Os08g43430
Translocation	Chr3	34354440	Chr2	18055265