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| Mutant Information |
|---|
| Mutant Name | FN3923-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3923-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 31
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 23259266 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g41070 |
| SBS | Chr1 | 27125027 | G-A | Homo | NON_SYNONYMOUS_CODING | LOC_Os01g47460 |
| SBS | Chr1 | 28124056 | G-A | Homo | ||
| SBS | Chr1 | 3626284 | C-T | Homo | ||
| SBS | Chr1 | 547533 | G-A | Homo | ||
| SBS | Chr10 | 20186690 | C-A | HET | ||
| SBS | Chr10 | 5990864 | C-T | HET | ||
| SBS | Chr10 | 7968193 | T-A | Homo | ||
| SBS | Chr11 | 12788717 | G-A | HET | STOP_GAINED | LOC_Os11g22310 |
| SBS | Chr11 | 15711419 | G-T | HET | ||
| SBS | Chr11 | 8962997 | G-A | HET | ||
| SBS | Chr11 | 9886328 | G-A | HET | ||
| SBS | Chr12 | 19072165 | G-T | Homo | ||
| SBS | Chr12 | 25443790 | T-C | HET | ||
| SBS | Chr12 | 27207326 | C-A | HET | ||
| SBS | Chr12 | 4387990 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os12g08640 |
| SBS | Chr2 | 30277452 | G-T | HET | ||
| SBS | Chr2 | 4222129 | C-A | HET | ||
| SBS | Chr3 | 10157900 | A-G | Homo | ||
| SBS | Chr3 | 19832848 | T-A | HET | ||
| SBS | Chr3 | 27054328 | T-A | Homo | ||
| SBS | Chr4 | 19950274 | G-T | Homo | ||
| SBS | Chr4 | 22044139 | T-A | Homo | ||
| SBS | Chr6 | 12812135 | C-T | HET | ||
| SBS | Chr6 | 24760196 | G-C | Homo | ||
| SBS | Chr6 | 24760199 | C-A | Homo | ||
| SBS | Chr7 | 10483236 | G-A | HET | ||
| SBS | Chr7 | 27252853 | C-G | HET | ||
| SBS | Chr7 | 6894587 | C-T | Homo | ||
| SBS | Chr9 | 1656145 | T-C | HET | ||
| SBS | Chr9 | 18601749 | T-C | HET |
Deletions: 13
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr7 | 1954716 | 1954717 | 1 | |
| Deletion | Chr2 | 8049361 | 8049362 | 1 | |
| Deletion | Chr8 | 10382961 | 10382965 | 4 | |
| Deletion | Chr7 | 14428494 | 14428496 | 2 | |
| Deletion | Chr6 | 17764103 | 17764104 | 1 | |
| Deletion | Chr11 | 23153906 | 23153908 | 2 | LOC_Os11g38890 |
| Deletion | Chr12 | 23596767 | 23596770 | 3 | |
| Deletion | Chr6 | 24759181 | 24759188 | 7 | |
| Deletion | Chr3 | 26231001 | 26320000 | 88999 | 15 |
| Deletion | Chr5 | 29210500 | 29210502 | 2 | |
| Deletion | Chr4 | 29476769 | 29476771 | 2 | |
| Deletion | Chr4 | 30720001 | 30780000 | 59999 | 8 |
| Deletion | Chr1 | 37273760 | 37273762 | 2 |
Insertions: 4
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 27134019 | 27134020 | 2 | |
| Insertion | Chr12 | 19997751 | 19997754 | 4 | |
| Insertion | Chr12 | 5609530 | 5609534 | 5 | |
| Insertion | Chr4 | 10337162 | 10337162 | 1 |
No Inversion
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr10 | 3666309 | Chr6 | 13026787 | |
| Translocation | Chr12 | 9228988 | Chr4 | 7080256 | |
| Translocation | Chr7 | 16496014 | Chr1 | 15922674 | |
| Translocation | Chr6 | 16700425 | Chr1 | 2811592 | 2 |
| Translocation | Chr9 | 19207898 | Chr5 | 10528297 | 2 |
| Translocation | Chr11 | 22180241 | Chr5 | 16082507 |