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| Mutant Information |
|---|
| Mutant Name | FN3924-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3924-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 28
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 16839296 | C-G | HET | ||
| SBS | Chr1 | 17059663 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os01g31200 |
| SBS | Chr10 | 11324058 | G-A | HET | ||
| SBS | Chr10 | 17468262 | C-T | HET | ||
| SBS | Chr10 | 7922082 | G-A | Homo | ||
| SBS | Chr11 | 12002375 | C-T | HET | ||
| SBS | Chr11 | 14364500 | G-A | HET | ||
| SBS | Chr11 | 20236508 | C-T | HET | ||
| SBS | Chr2 | 21317992 | T-A | HET | ||
| SBS | Chr2 | 7372776 | A-G | HET | ||
| SBS | Chr4 | 17260534 | G-A | Homo | ||
| SBS | Chr5 | 10330677 | G-A | Homo | ||
| SBS | Chr5 | 4495879 | A-T | HET | ||
| SBS | Chr5 | 6869647 | C-T | Homo | ||
| SBS | Chr5 | 8402099 | G-C | Homo | ||
| SBS | Chr6 | 2086936 | A-G | HET | NON_SYNONYMOUS_CODING | LOC_Os06g04780 |
| SBS | Chr6 | 20930110 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os06g35870 |
| SBS | Chr6 | 3023228 | C-T | HET | ||
| SBS | Chr7 | 12494036 | G-A | HET | ||
| SBS | Chr7 | 14154806 | G-A | HET | ||
| SBS | Chr7 | 16754996 | G-A | HET | ||
| SBS | Chr7 | 2525489 | A-T | HET | ||
| SBS | Chr7 | 3363180 | G-T | HET | ||
| SBS | Chr8 | 10407652 | G-A | Homo | ||
| SBS | Chr8 | 19170691 | G-A | Homo | ||
| SBS | Chr8 | 26712635 | G-A | HET | ||
| SBS | Chr8 | 4081625 | G-T | HET | ||
| SBS | Chr9 | 6728259 | T-C | HET |
Deletions: 12
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr7 | 3972632 | 3972639 | 7 | LOC_Os07g07910 |
| Deletion | Chr8 | 3978932 | 3978933 | 1 | |
| Deletion | Chr7 | 4883460 | 4883461 | 1 | LOC_Os07g09320 |
| Deletion | Chr6 | 8185168 | 8185169 | 1 | |
| Deletion | Chr5 | 9465067 | 9465072 | 5 | |
| Deletion | Chr5 | 13428798 | 13428803 | 5 | |
| Deletion | Chr12 | 17996187 | 17996188 | 1 | LOC_Os12g30050 |
| Deletion | Chr12 | 21743399 | 21743408 | 9 | |
| Deletion | Chr5 | 22626680 | 22626688 | 8 | |
| Deletion | Chr12 | 24988001 | 25043000 | 54999 | 10 |
| Deletion | Chr5 | 29667655 | 29667656 | 1 | |
| Deletion | Chr3 | 35454892 | 35454902 | 10 |
Insertions: 2
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr11 | 4148265 | 4148265 | 1 | |
| Insertion | Chr3 | 28389567 | 28389588 | 22 |
Inversions: 5
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr7 | 9582717 | 10291947 | |
| Inversion | Chr7 | 9582722 | 10291944 | |
| Inversion | Chr11 | 19390202 | 19639914 | |
| Inversion | Chr5 | 24353838 | 24552181 | LOC_Os05g41580 |
| Inversion | Chr5 | 24353847 | 24552191 | LOC_Os05g41580 |
Translocations: 1
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 6225525 | Chr5 | 16255670 | 2 |