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Mutant Information

Variant Information

Single base substitutions: 24

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20284465	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g36550
SBS	Chr1	21618097	A-G	HET
SBS	Chr1	39714487	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g68350
SBS	Chr11	10569043	A-T	HET
SBS	Chr11	10667584	G-A	HET	STOP_GAINED	LOC_Os11g18790
SBS	Chr11	13807366	C-A	HET
SBS	Chr11	15759730	G-A	HET
SBS	Chr11	15759731	G-A	HET
SBS	Chr11	20851987	A-T	HET
SBS	Chr11	9992666	A-C	HET
SBS	Chr2	2086172	C-T	HET
SBS	Chr3	19696004	C-T	Homo
SBS	Chr4	2510344	G-A	HET
SBS	Chr4	25123767	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g42460
SBS	Chr4	8840726	C-T	Homo
SBS	Chr5	15870975	T-C	HET
SBS	Chr5	16243347	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os05g27860
SBS	Chr5	27575789	C-T	Homo	NON_SYNONYMOUS_CODING	LOC_Os05g48110
SBS	Chr5	3419811	G-A	Homo
SBS	Chr6	2457199	A-T	HET
SBS	Chr7	1145843	C-T	HET
SBS	Chr7	25369084	G-A	HET
SBS	Chr7	27278854	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g45680
SBS	Chr9	9236679	G-C	Homo

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	481210	481215	5
Deletion	Chr9	9586510	9586511	1
Deletion	Chr10	9623476	9623502	26	LOC_Os10g18880
Deletion	Chr11	10077691	10077693	2
Deletion	Chr2	11498236	11498242	6
Deletion	Chr1	11503807	11503808	1
Deletion	Chr4	14506815	14506833	18
Deletion	Chr6	14626910	14626914	4	LOC_Os06g24970
Deletion	Chr8	14659952	14659957	5	LOC_Os08g24290
Deletion	Chr9	16238459	16238460	1
Deletion	Chr9	18570163	18570164	1
Deletion	Chr9	18866086	18866094	8
Deletion	Chr1	19350874	19350886	12
Deletion	Chr6	20152822	20152831	9
Deletion	Chr10	21098042	21098043	1
Deletion	Chr3	22004275	22004285	10
Deletion	Chr5	24937743	24937747	4	LOC_Os05g42950
Deletion	Chr4	27015485	27015488	3
Deletion	Chr2	33954601	33954603	2
Deletion	Chr1	35531001	35610000	78999	14
Deletion	Chr1	38195006	38195012	6

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	15082711	15082712	2
Insertion	Chr11	17887434	17887483	50
Insertion	Chr12	14707550	14707553	4
Insertion	Chr4	2965047	2965047	1
Insertion	Chr7	25877605	25877606	2
Insertion	Chr8	8901349	8901350	2

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	28638510	29293666	2
Inversion	Chr3	28638519	29293675	2
Inversion	Chr1	35535177	35653584	LOC_Os01g61620
Inversion	Chr1	35608022	35653588	LOC_Os01g61620
Inversion	Chr1	40175717	40297673	LOC_Os01g69120

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	1886858	Chr1	40175716	2
Translocation	Chr6	1886888	Chr1	40175720	2
Translocation	Chr9	4899603	Chr4	8157903	LOC_Os04g14560
Translocation	Chr10	6771102	Chr3	25422751	LOC_Os03g45040
Translocation	Chr5	16753459	Chr3	28196824
Translocation	Chr5	16753784	Chr3	28196816
Translocation	Chr8	20584384	Chr6	1072416

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