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| Mutant Information |
|---|
| Mutant Name | FN3928-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3928-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 23
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 25930475 | G-C | HET | ||
| SBS | Chr1 | 35177024 | T-C | Homo | NON_SYNONYMOUS_CODING | LOC_Os01g60850 |
| SBS | Chr1 | 41601404 | A-G | Homo | ||
| SBS | Chr10 | 17364193 | A-G | Homo | ||
| SBS | Chr10 | 8398424 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os10g16860 |
| SBS | Chr11 | 12962417 | G-A | HET | ||
| SBS | Chr12 | 15943162 | T-G | HET | ||
| SBS | Chr12 | 2612743 | A-G | HET | ||
| SBS | Chr2 | 24098678 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os02g39884 |
| SBS | Chr2 | 26706875 | G-A | HET | ||
| SBS | Chr2 | 9705976 | C-T | HET | ||
| SBS | Chr4 | 25834734 | C-T | Homo | ||
| SBS | Chr4 | 7834450 | C-T | HET | ||
| SBS | Chr5 | 11445843 | C-A | HET | ||
| SBS | Chr5 | 26206519 | G-A | HET | ||
| SBS | Chr6 | 10598087 | C-T | HET | ||
| SBS | Chr6 | 21676529 | A-G | HET | ||
| SBS | Chr7 | 17887716 | G-A | Homo | ||
| SBS | Chr7 | 17927029 | G-A | Homo | ||
| SBS | Chr7 | 17927030 | G-T | Homo | ||
| SBS | Chr8 | 20307741 | A-T | HET | ||
| SBS | Chr8 | 26207866 | C-A | Homo | ||
| SBS | Chr9 | 1033625 | G-A | Homo | STOP_GAINED | LOC_Os09g02490 |
Deletions: 19
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr3 | 3926627 | 3926628 | 1 | |
| Deletion | Chr4 | 4273475 | 4273488 | 13 | |
| Deletion | Chr2 | 7392369 | 7392371 | 2 | |
| Deletion | Chr5 | 9445166 | 9445167 | 1 | |
| Deletion | Chr9 | 11589095 | 11589111 | 16 | |
| Deletion | Chr5 | 13310477 | 13310481 | 4 | |
| Deletion | Chr2 | 16021424 | 16021430 | 6 | |
| Deletion | Chr11 | 17211173 | 17211179 | 6 | LOC_Os11g29700 |
| Deletion | Chr11 | 17324813 | 17324815 | 2 | |
| Deletion | Chr11 | 17601987 | 17602001 | 14 | |
| Deletion | Chr7 | 17926794 | 17926798 | 4 | |
| Deletion | Chr7 | 18053001 | 18069000 | 15999 | 3 |
| Deletion | Chr5 | 18917468 | 18917472 | 4 | |
| Deletion | Chr8 | 25586105 | 25586126 | 21 | LOC_Os08g40420 |
| Deletion | Chr1 | 27969610 | 27969620 | 10 | |
| Deletion | Chr1 | 28622338 | 28622344 | 6 | |
| Deletion | Chr3 | 29465535 | 29465546 | 11 | |
| Deletion | Chr1 | 38871188 | 38871189 | 1 | |
| Deletion | Chr1 | 40449521 | 40449537 | 16 |
Insertions: 5
No Inversion
Translocations: 9
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr7 | 6517561 | Chr5 | 7801229 | LOC_Os07g11790 |
| Translocation | Chr7 | 6522243 | Chr5 | 7801227 | |
| Translocation | Chr8 | 9744511 | Chr3 | 16640857 | |
| Translocation | Chr6 | 12925520 | Chr1 | 19531381 | LOC_Os01g35280 |
| Translocation | Chr6 | 12925526 | Chr1 | 19530541 | |
| Translocation | Chr12 | 15658464 | Chr8 | 15380766 | |
| Translocation | Chr12 | 18848693 | Chr4 | 4358503 | |
| Translocation | Chr6 | 19268546 | Chr1 | 15459834 | |
| Translocation | Chr11 | 28772478 | Chr3 | 11169112 | LOC_Os11g47640 |